| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_2761 |
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| Symbol | |
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| ID | 5323631 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009636 |
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| Strand | - |
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| Start bp | 2879906 |
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| End bp | 2882272 |
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| Gene Length | 2367 bp |
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| Protein Length | 788 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 640791706 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_001328426 |
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| Protein GI | 150397959 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.859208 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGCAATG AACAAGGGCC CCTCCCGACG GACATCTACC TGTCCTTCGT AAGCTCGCTC
TATCATAATC GTGGGATGCT CGTGATCGGC ATGCTTTTGC ATGTCGCCAC ATTTCTGCTC
GTCTTTCTGA AGACATCGGA CGCATTCTAC CTCGCCTGCA TCGTGGCGAT CCTCTTTCTA
TGGGTTTTGC GCAACCTGGA TATGATGCGG TTCGACCGTT CGGATCTCTC CGATGCGGAC
GATGCAGCCG TCAGAAGATG GGAAAACAGG TACATAGCCG GAGGGGTTGC CGTGGCGCTG
ACCTGCGGCG CAGCCTGCGC ATATGCCATA GCGGTCACCC GGGACTCCTT CGCTCAGCTC
GCGTGCATCT CGGTGACGCT TGCTTCGCTC AGTCCATTGG TTGGCCGCAA TTTCGGCTCC
GAGCGGGCGG TGCTGCTGCT GTCATCGGCG GCGTGCCTGC CGATGATGAT CGCCGCCCTT
TCTCTGGGCG ACCCCTTCAT GGCTGCGCTG GCGTTCCTGA TACTCCCGTT CATTCTGTCG
ACTCGAATGA TGGCCAACAA TGTACGCTCC TTCCTCAGCG AAAAAGTGCT CTCGGCGAGG
AACGATAACC TGCTTTCGGC CGAGCAAATC GGCACGATCG CCAGCCAGTT CGAGACTGCA
CTCAACAGTA TGACGCGCGG CCTTTTCATG CTGGACAGGC ACAGTCGCGT TGCTGTCGTG
AATGAGCGTG CCGCCGAACT TCTTCGCCTC GGCGACAAAG CTGAATTGAA AGGAATGCCG
ATCGACGACG TGCTCGAGCG TGGTGCTCGG GGCATGGCGC TCGACGCGGA AAAGAGCGAG
TACATCGCAA CCCAGCTTCA CCTCCTGATC GCTGGCAGGC GCAGCCGCAC TCTCATCTCC
ATTGCGGAAG ATCTCTTCCT CGAATTTGCG GCCTACCCTC GGGAGAACGG CGAAGTCGTC
CTGATTTTGG AAGACATGAC GGCGCATGTT CTGGCGGAGC GGCAGATTCT GTACATGGCG
CGATTCGACA TGCTGACCGG ACTGCCGAGC CGTAATCATT TTGCCGAGCT TGTTCACGAC
GCAATGGGGG TCGACGCCGC GCCCGACCGC GATGTCGGCT TTCTGCTCCT CGACGTTGCC
GAGTTCAGGC ACGTCAACGA CACGAGGGGC CATATTGCCG GCGATAAACT GCTCAAGGCG
ATTGCAGTCC GATTGAAAAG CCTCGCGGCA GCCGAAACGA TCGCCGCCCG TCTGATGGGC
GACGAGTTCT TGGTGTTTTT CCCGAACCTG CCAGGTCGCT CGGATCTGAA GGAGCGGATA
TGCGGTCTCC ATGCCGAACT GCAAGGCACC TACGTGGCCG ATGGCTTGAG ATTCGAGATG
GCGATAGATG GCGGCTTCGT CCTCGTGAAT GCTAGCGATT TCCGGTTCGA GGAATTGCAG
ATCAAGGCGG ACTTGGCGTT GTCGGAAGCG AAAAAACGCG GCCATGGCGG CTGCGCTGCC
TTCGAGGAGG CAATGGAGGC CCGCTATCTC GACCGTCTGA AGCTCAAGGT CGATCTGCGG
GAGGCGGTCG CCGGGCGCGC CCTCGACCTT GCCTATCAAC CGATGTTCAC ACCGGACGGG
TCACGGGTCG AGAGCTGCGA GGCCTTGACG CGCTGGATCC ACCCCGAACG CGGTTCGGTA
CCGCCCCCGG TCTTCATCCA GCTTGCTGAA GAGCTGGGGC TCGTCACGGA GTTAACGCGT
CTGGTGGTCG CGCAGGCCTG CCGCGACTGC CTGAGCTGGC CACCGGAAGT GGCGGTCTCC
GTCAATCTGT CGGTTCTCGA TCTGCGCGGA GACGAGATAG TGGGGGTCCT GACCGGGATT
CTGAAGGAGA CGGGACTGGC GCCGGATCGG CTGCATCTGG AAATTACGGA AAGCTGCCTG
ATGGCCGACC CGGCGCGGGT CCAGAAGGTC CTTCATCAAT TGCGTGCGGG TGGCATGACG
ATCGCGATAG ATGACTTCGG AACCGGTTAC TCGAGCCTCA GCTATCTCGA TTCGCTCCCG
GTCAGCGTCA TCAAGATCGA CCGATCCTTC GTTCATGATA TCGACGAAGA CTCGCGACAC
TTCAAATTGC TGCTCGGCAT TGTCAATCTG GCCCGCGCCC TTGAACTCAA GATCGTCGCG
GAGGGGGTGG AGACGCCCGA GCAGCTGCAG CTCCTGCGCG AGCGCAATTG TGCGGATCTG
ATTCAGGGAT TCGTCTTTGC CGCGCCGATG CCCGCTTCTG CCGTTGCAGC CCTTTGCACA
CACACGTCGC AGGCCAGGGC CGCATCAGGC GGCTCTCCCT CCGCCGACTT TCATGAAAAT
CCGTCACAGC CCAAGTCCCT GGGCTGA
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| Protein sequence | MRNEQGPLPT DIYLSFVSSL YHNRGMLVIG MLLHVATFLL VFLKTSDAFY LACIVAILFL
WVLRNLDMMR FDRSDLSDAD DAAVRRWENR YIAGGVAVAL TCGAACAYAI AVTRDSFAQL
ACISVTLASL SPLVGRNFGS ERAVLLLSSA ACLPMMIAAL SLGDPFMAAL AFLILPFILS
TRMMANNVRS FLSEKVLSAR NDNLLSAEQI GTIASQFETA LNSMTRGLFM LDRHSRVAVV
NERAAELLRL GDKAELKGMP IDDVLERGAR GMALDAEKSE YIATQLHLLI AGRRSRTLIS
IAEDLFLEFA AYPRENGEVV LILEDMTAHV LAERQILYMA RFDMLTGLPS RNHFAELVHD
AMGVDAAPDR DVGFLLLDVA EFRHVNDTRG HIAGDKLLKA IAVRLKSLAA AETIAARLMG
DEFLVFFPNL PGRSDLKERI CGLHAELQGT YVADGLRFEM AIDGGFVLVN ASDFRFEELQ
IKADLALSEA KKRGHGGCAA FEEAMEARYL DRLKLKVDLR EAVAGRALDL AYQPMFTPDG
SRVESCEALT RWIHPERGSV PPPVFIQLAE ELGLVTELTR LVVAQACRDC LSWPPEVAVS
VNLSVLDLRG DEIVGVLTGI LKETGLAPDR LHLEITESCL MADPARVQKV LHQLRAGGMT
IAIDDFGTGY SSLSYLDSLP VSVIKIDRSF VHDIDEDSRH FKLLLGIVNL ARALELKIVA
EGVETPEQLQ LLRERNCADL IQGFVFAAPM PASAVAALCT HTSQARAASG GSPSADFHEN
PSQPKSLG
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