| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_2684 |
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| Symbol | |
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| ID | 5323553 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009636 |
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| Strand | + |
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| Start bp | 2786895 |
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| End bp | 2788778 |
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| Gene Length | 1884 bp |
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| Protein Length | 627 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640791628 |
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| Product | pepF/M3 family oligoendopeptidase |
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| Protein accession | YP_001328349 |
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| Protein GI | 150397882 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1164] Oligoendopeptidase F |
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| TIGRFAM ID | [TIGR02290] oligoendopeptidase, pepF/M3 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 0.667149 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAATTCG CTTCGCCACG TCTCGCCGCC TCCGGGCCCA CTTTGCTGCG TGCCGCGCTG
GCGAACTCCG GGGCTGATCA GGCAGCCTCG GCGCCGGCCG AACTCGGCGA CCTGCCGTCC
TGGCGGCTAA CGGACCTCTA CCTTTCGCCA TCCTCCGAGG AATTCCGCTC CGACCTCGCC
AGGGCCGAGG CCGACGCGGT CGCCTTTGAG GCTAAGTGGA AGGGCAAGTT GGACCAGGCC
GCCGGCCGAA CGGGTGATGA GGGTCTCGGC GCCGCCGTGA ATGAGTTCGA GGCACTGGAC
GACCTCATGG GCCGCATCGC TTCGTTTGCC GGGCTCACCT ATTTTTCCGA CACTTCGAAT
CCGGCGAACG GCAAGCTCTA CGGCGACATC CAGTCGAAGC TTACCGATAT TTCGGCGCAT
CTCCTGTTCT TCTCGCTGGA GCTCAACCGC ATCGACGACA AGCGCGTCGA TGCGGCACTC
GCGGCCGATG GCCTTGCCGC CCACTATGCC CCGTGGATTC TCGATCTGCG CAAGGACAAG
CCCTATCAGC TCGACGACAG GCTGGAGCAA CTCTTCCTTG AAAAAACGAT GACTGGCGCA
AACGCCTTCA ACCGGCTCTT CGACGAAACG ATCGCATCTC TGACCTTTTC GGTGGACGGC
AAGGAGCAGC CGCTGGAAGT GACGCTCAAC CTTCTGCAGG ATTCCTCCGT AGAGGTGCGC
AGGAAGGCCG CGCTCGCGCT CGCAGAAACC TTCAAGGCAA ATATCCGCAC CTTCACCCTC
GTCACCAATA CGCTCGCGAA GGACAAGGAA ATCTCCGACC GCTGGCGCGG ATTCGAGGAT
ATAGCCGACA GCCGCCATCT CGCCAATCGC GTGGAGCGCG AGGTCGTGGA TGCTCTGGCC
GCATCGGTGA AGGCCGCCTA TCCACGCCTC TCGCACCGGT ATTATGCGAT GAAGGCCAAG
TGGCTCGGCA TGGAGCAGAT GGATTTCTGG GACCGGAACG CTCCTCTGCC CGAGACCCCG
AACGCGCTCA TTCCCTGGAA CGATGCCAGG GATACGGTCC TTTCCGCCTA TCACGCCTTC
GCCCCGGAAA TGGCGTCGAT CGCCCGGCGC TTCTTCGACG ATGGCTGGAT CGATGCGCCG
GTCCGCCCCG GCAAGGCGCC AGGCGCCTTC GCGCATCCGA CCGTCCCTTC CGTGCACCCC
TATGTTCTCG TCAATTATAT GGGCAAGCCG CGCGACGTCA TGACGCTTGC CCACGAGCTC
GGACACGGCG TCCACCAGGT CCTTGCCGGC GCGCAGGGCG CGCTGATGGC CTCGACACCC
CTGACACTTG CGGAAACCGC ATCCGTCTTC GGAGAGATGC TGACCTTCCG CGCCCTCCTC
GACCGGACGA AGGACCGGCG CGAGCGAAAG GCGATGCTTG CGCAGAAGGT CGAGGATATG
ATCAACACGG TCGTCCGGCA GATCGCCTTC TACGATTTCG AACGCAAAGT GCATACGGCC
CGCAAGGAAG GCGAACTGAC GGCCGAGGAT CTCGGCCGCA TATGGATGTC GGTGCAGAGC
GAAAGCCTCG GCCCGGCGAT CCGGCTTTCG GAGAGTTACG AGACCTACTG GGCCTATATT
CCCCACTTCA TCCATTCGCC TTTCTACGTC TATGCCTATG CCTTCGGTGA TTGCCTCGTA
AACTCCCTCT ATGCCGTCTA TCAGAACGCC GAGCGCGGTT TCCAGGAGAA GTATTTCGAT
ATGCTGAAGG CGGGCGGAAC GAAGCATCAT TCCGAACTTC TGGCGCCCTT CGGGCTCGAC
GCCGCCGATC CGTCGTTCTG GGCACAGGGC CTGTCGATGA TTGAGGGGCT CATCGACGAA
CTGGAGGCGC TTGATAAGGC GTAA
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| Protein sequence | MKFASPRLAA SGPTLLRAAL ANSGADQAAS APAELGDLPS WRLTDLYLSP SSEEFRSDLA
RAEADAVAFE AKWKGKLDQA AGRTGDEGLG AAVNEFEALD DLMGRIASFA GLTYFSDTSN
PANGKLYGDI QSKLTDISAH LLFFSLELNR IDDKRVDAAL AADGLAAHYA PWILDLRKDK
PYQLDDRLEQ LFLEKTMTGA NAFNRLFDET IASLTFSVDG KEQPLEVTLN LLQDSSVEVR
RKAALALAET FKANIRTFTL VTNTLAKDKE ISDRWRGFED IADSRHLANR VEREVVDALA
ASVKAAYPRL SHRYYAMKAK WLGMEQMDFW DRNAPLPETP NALIPWNDAR DTVLSAYHAF
APEMASIARR FFDDGWIDAP VRPGKAPGAF AHPTVPSVHP YVLVNYMGKP RDVMTLAHEL
GHGVHQVLAG AQGALMASTP LTLAETASVF GEMLTFRALL DRTKDRRERK AMLAQKVEDM
INTVVRQIAF YDFERKVHTA RKEGELTAED LGRIWMSVQS ESLGPAIRLS ESYETYWAYI
PHFIHSPFYV YAYAFGDCLV NSLYAVYQNA ERGFQEKYFD MLKAGGTKHH SELLAPFGLD
AADPSFWAQG LSMIEGLIDE LEALDKA
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