Gene Smed_2631 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_2631 
Symbol 
ID5323500 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009636 
Strand
Start bp2731583 
End bp2734180 
Gene Length2598 bp 
Protein Length865 aa 
Translation table11 
GC content62% 
IMG OID640791575 
ProductDNA ligase D 
Protein accessionYP_001328296 
Protein GI150397829 
COG category[L] Replication, recombination and repair 
COG ID[COG1793] ATP-dependent DNA ligase
[COG3285] Predicted eukaryotic-type DNA primase 
TIGRFAM ID[TIGR02776] DNA ligase D
[TIGR02777] DNA ligase D, 3'-phosphoesterase domain
[TIGR02778] DNA polymerase LigD, polymerase domain
[TIGR02779] DNA polymerase LigD, ligase domain 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones29 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCCGCTC GCAACGAAAC ACTTACCGAA TATAACAGGC GCCGTGACTT CACGCGGACG 
AAGGAGCCCA AGGGAACCGT CGCTCGTCGC AGCGGGAACA GGATGCGGTT CCTGGTCCAG
AAGCACGCCG CAACCCGCCT GCATTACGAC TTTCGCCTGG AATGGGAGGG CGTGCTGAAG
AGCTGGGCGG TGACGCGCGG CCCAAGCCTC AACCCCGAGG ACAAGCGCCT TGCCGTCCGC
ACCGAAGACC ACCCGCTTGC TTATGGCGAC TTCGAAGGAA CCATCCCGAA GGGAGAATAT
GGCGGCGGCA CCGTGATGCT CTGGGATACG GGCTGGTGGG AGCCGGAGGA TGACCCGTCC
AAAGCCTTGA GGAAGGGCAA GCTCTCCTTC AAGCTGCATG GCAGCCGCAT GAAGGGAGGC
TGGGCTCTGG TACGCATGCG CCCACGCGAA GGCGAGAAGC GCGAGAACTG GCTGCTCGTC
AAGGAAACGG ATGAGATCGC CTCCAAGGAT GGCGAGAGCC TGATCAACGA AAACATCACC
AGCGTCGTCA CCGGTCGCAC CATGGAAGAG ATCGCCGAAG GCAGGGGCGA AAAGCGCTCA
CGCGTCTGGC ACTCGAACAA AAGCACGGCG GCCAATCTCA GGGCCGGCGC GGTCGCTGAA
GACGGCAATG CACGCAAGCG CCCCACGCGA AAGCCCTCAG GCAAACTGCC TACCTTCCGG
GCGCCTCAGC TGGCGACGCT GGTGACCCAG GTACCCGTGG GCGACGCGTG GCTGAACGAA
GCCAAGTTCG ACGGCTACCG GCTTGTTTGC GCCCTGGGCG GCGGTACTGC CCGCTGCTAC
ACGCGCAACG GACTCGATTG GACCGAAAAG TTCCCGGTCA TTGCCGCAGC CCTTGCCGAA
CTCGACTGCC GGTCCGCCCT TATCGACGGC GAAGTCGTAG CACTGTCAGA AGGCGGGTCC
ACTTTCTCCG CCCTGCAGAA AGCGCTTGCA ACAGGGGCCA GCACACGGCT TTACGCGTTC
GATCTCATCG AGCTCGACGG CAAGGATTTG AGCAGAAAGC CGCTCGTGGA GCGCAAGGAA
AAGCTCGAAG CGCTGCTCCA AACGCTGGGC ACGACCTCGA CCATCCAGTT CAGCGAGCAT
GTTCGCGGGA ATGGCGAGCA CGTGCTTGCC GCCATATGCA AGGCTGGTCA GGAGGGTATA
ATCGCCAAGG AGGCGAACGC CCCCTACCGG AGCGGGCGCA CCCGAAGCTG GCTCAAGGTG
AAATGCACCA AACGCCAGGA ATTCGTCATC GGCGGCTACA GCCTGTCGGA CAAGAAGGGG
CGCGCCTTCG CCTCGCTCAT CGTCGGGACT TTCGAAGGCG GGAAGCTGAT CTATCGTGGC
GGGGTCGGAA CCGGTTTCAG CAAAAAGACG ATGGAGGACC TCGCCGCAGC CTTCGCCTCA
CGCAAAAGAG AAACGTCGCC CTTCGACAGC ATACCGCGAG AGAGAATGCG ACATTCAGTT
TGGCTGAAGC CGGACCTGGT GGCCGAGGTA GACTTCGCCG AATTCACGGC TGAAGGCCAT
ATCCGCCACG GTTCGTTCGA GGGATTGCGC GAGGACAAGG AGGCAAAGGC CGTGAAACTG
GAGACATCGA AGCCAGCGGA AGTGGAGTCC GGGACCACCA CCAAGGGTAA ATCCACCACA
AAGGCGCGCA GGACATCGGC CGCACAAGGT GACGCCGACG TCCTCGGCAT CCGTATTTCG
CATCCGGACC GCGTCCTGTT CAAAGGTCAG GGCATCACCA AGATCGATCT TGCCCGCTAT
TATGCAATCG TCGCCGACAG GATGCTCCCC TTTGCCGCCG ACCATCCCGT CTCGCTGGTG
CGCTGCCCGC AGGGCGGCGA GCGGCAGTGC TTCTTCCAGA AGCACGCAAG CGACGGCTTT
CCCGATGCGA TCAGGGAAGT GCCCATCACC GAATCGTCGG GAGACACCGA AGACTACATG
TATATCCACG ATGCCAAGGG GCTCGTCGCA GCAGTACAGA TGGGGACGCT CGAATTTCAC
ATCTGGGGCG CAAGGACCGA TCGGCTGGAG AAACCCGATC GGCTGGTCTT CGATCTCGAC
CCCGATCCAA GCGTCGACTT CGCAACCGTC AAAGCAGCGG CCGTAGAGCT TCGCGACGAG
CTCGCCGGGA TCGGCCTGAA AACCGTGCCG ATGGTGACGG GCGGCAAGGG AGTCCACGTG
ATCGTGCCGC TCCGCCCCCA TGCCGAATGG GATGAAGTAA AAGGGTTCGC CAAGGCGCTC
GCGCAATCTT TTGCCGAGCG CGATCCGGAT CATTTCGTCG CGACCATGTC CAAGGCCAAG
CGCAAGGGGA GGATTTTCAT CGACTGGCTG CGCAACGACC GCGGCGCCAC GGCGATAGCC
CCCTACTCCA CCCGTGCGCG CGCCGGCGGA CCGGTCGCCA CTCCGGTCGG CTGGGAGGAG
CTTGAAAGCC TCGATGCCGC CAATGGGTTT CATATTCCCG AAATTCTCGC ACGCATCGAG
GCCGGAACCG ATCCCTGGCG GGACATCGGC AAGATCAGTC AGTCGCTGAC GAAGAAGATC
CTGAACTCGG TCGCGTGA
 
Protein sequence
MAARNETLTE YNRRRDFTRT KEPKGTVARR SGNRMRFLVQ KHAATRLHYD FRLEWEGVLK 
SWAVTRGPSL NPEDKRLAVR TEDHPLAYGD FEGTIPKGEY GGGTVMLWDT GWWEPEDDPS
KALRKGKLSF KLHGSRMKGG WALVRMRPRE GEKRENWLLV KETDEIASKD GESLINENIT
SVVTGRTMEE IAEGRGEKRS RVWHSNKSTA ANLRAGAVAE DGNARKRPTR KPSGKLPTFR
APQLATLVTQ VPVGDAWLNE AKFDGYRLVC ALGGGTARCY TRNGLDWTEK FPVIAAALAE
LDCRSALIDG EVVALSEGGS TFSALQKALA TGASTRLYAF DLIELDGKDL SRKPLVERKE
KLEALLQTLG TTSTIQFSEH VRGNGEHVLA AICKAGQEGI IAKEANAPYR SGRTRSWLKV
KCTKRQEFVI GGYSLSDKKG RAFASLIVGT FEGGKLIYRG GVGTGFSKKT MEDLAAAFAS
RKRETSPFDS IPRERMRHSV WLKPDLVAEV DFAEFTAEGH IRHGSFEGLR EDKEAKAVKL
ETSKPAEVES GTTTKGKSTT KARRTSAAQG DADVLGIRIS HPDRVLFKGQ GITKIDLARY
YAIVADRMLP FAADHPVSLV RCPQGGERQC FFQKHASDGF PDAIREVPIT ESSGDTEDYM
YIHDAKGLVA AVQMGTLEFH IWGARTDRLE KPDRLVFDLD PDPSVDFATV KAAAVELRDE
LAGIGLKTVP MVTGGKGVHV IVPLRPHAEW DEVKGFAKAL AQSFAERDPD HFVATMSKAK
RKGRIFIDWL RNDRGATAIA PYSTRARAGG PVATPVGWEE LESLDAANGF HIPEILARIE
AGTDPWRDIG KISQSLTKKI LNSVA