Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smed_2627 |
Symbol | tolB |
ID | 5323496 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sinorhizobium medicae WSM419 |
Kingdom | Bacteria |
Replicon accession | NC_009636 |
Strand | - |
Start bp | 2727533 |
End bp | 2728843 |
Gene Length | 1311 bp |
Protein Length | 436 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 640791571 |
Product | translocation protein TolB |
Protein accession | YP_001328292 |
Protein GI | 150397825 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0823] Periplasmic component of the Tol biopolymer transport system |
TIGRFAM ID | [TIGR02800] tol-pal system beta propeller repeat protein TolB |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 31 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGAAATGC TGAGACGCAA TTTTTTCCGC CTTCTGATGG TGCTGGTCGC AGGCTGCGGG CTCATTGCCT CGCCGGCAAA GGCGCTCGTC GAGATCGACA TCAACAAAGG TAACGTCGAG CCGCTGCCGA TCGCGATCAC GGATTTCGTG CAGGGCGAGC TTGCGCAGAA GATATCCGAC GTCATTGCCG CCGATCTGAA GCGCTCCGGG CTTTTCGCTC CCATCAACAA GGGCGCGTTC ATCGAGAAGG TCTCCAATCC CGATGCCACT CCGCGCTTCG AGGACTGGAA GGTCATCAAC GCGCAGGCGC TCGTCATTGG TCGCGTCACA AAAGAAGGCG ACGGCAGGCT GAAGGCGGAG TTCCGCCTCT GGGATACCTT CGCCGGAACG CAGATGCTGG GTCAGCAGTT CTACACCCAG CCGGAAAACT GGCGCCGGGT CGCCCACATC ATCGCCGATG CGATCTATGA AAGGATCACG GGCGAGAAGG GCTATTTTGA CACGCGCATC GTCTATGTCG CCGAAAGTGG TCCGAAAAAT GCGCGCCAGC GCCAGCTGGC CATCATGGAC CAGGACGGGG CCAATTCCCG CGCGCTCACC AATTCCAATG ACATCGTGTT GACGCCGCGC TTCTCGCCGA ACCGCCAGGA AATCACCTAT ATGTCGTTCG AGAACCAGCA GCCACGGGTC TATCTGCTGC AGCTGGAAAC GGGGCAGCGC GAGGTGGTCG GCAACTTCCC GGGCATGACC TTCGCTCCAC GCTTTTCGCC GGACGGCCAG CGGGTGATCA TGAGCCTGCA GCAGGAAGGC AACGCCAATA TCTATACGAT GGACCTGCGC TCGCGCACGA CGACGCGGCT CACCAACACC GCGGCGATCG ACACCTCGCC GTCCTATTCG CCGGACGGAA GCCGGGTCGT TTTCGAAAGT GATCGCGGCG GCAGGCAGCA GCTCTATGTC ATGGGTGCCG ATGGCTCGGG CCAGACGCGC ATCTCCTTCG GCGACGGTTC CTATTCGACG CCGGTCTGGT CCCCGCGCGG CGATCTCATC GCCTTCACCA AGCAGTCGGG TGGGAAGTTC TCGATCGGTG TCATGAAACC GGACGGCTCG GGTGAGCGTA TCCTCACGAC AGGCTTCCAT AATGAAGGTC CCACCTGGGC GCCGAACGGC CGCGTGCTGA TGTTCTTCCG CCAGAACGCC GGCGCAGGCG GCCCACAGCT CTATTCGATC GACCTGACGG GCTATAACGA GCAGCTTGTC CCGACCCAGG GCTTCGCCTC GGACCCGGCC TGGTCGCCGC TCATGGAGTA G
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Protein sequence | MEMLRRNFFR LLMVLVAGCG LIASPAKALV EIDINKGNVE PLPIAITDFV QGELAQKISD VIAADLKRSG LFAPINKGAF IEKVSNPDAT PRFEDWKVIN AQALVIGRVT KEGDGRLKAE FRLWDTFAGT QMLGQQFYTQ PENWRRVAHI IADAIYERIT GEKGYFDTRI VYVAESGPKN ARQRQLAIMD QDGANSRALT NSNDIVLTPR FSPNRQEITY MSFENQQPRV YLLQLETGQR EVVGNFPGMT FAPRFSPDGQ RVIMSLQQEG NANIYTMDLR SRTTTRLTNT AAIDTSPSYS PDGSRVVFES DRGGRQQLYV MGADGSGQTR ISFGDGSYST PVWSPRGDLI AFTKQSGGKF SIGVMKPDGS GERILTTGFH NEGPTWAPNG RVLMFFRQNA GAGGPQLYSI DLTGYNEQLV PTQGFASDPA WSPLME
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