| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_2581 |
|---|
| Symbol | |
|---|
| ID | 5323449 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009636 |
|---|
| Strand | - |
|---|
| Start bp | 2681831 |
|---|
| End bp | 2682574 |
|---|
| Gene Length | 744 bp |
|---|
| Protein Length | 247 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640791524 |
|---|
| Product | GntR family transcriptional regulator |
|---|
| Protein accession | YP_001328246 |
|---|
| Protein GI | 150397779 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2188] Transcriptional regulators |
|---|
| TIGRFAM ID | [TIGR02018] histidine utilization repressor, proteobacterial |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 0.544021 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGGTAT TGGGGCGCAG GAGCGATAGG GCGGTCTTCG ACGACGGACC GGTGCCGCGC
TATGAGGCGG TCAAGCAGTT CATCCGGAGC CGCATCGAAA GCGGCGAGTG GCCGCCACAC
CATCGCATTC CTTCCGAAAA CGATATCGTC GCCGATCTCG GCGTCAGCCG CATGACCGCC
AATCGCGCCC TTCGCGAGTT GGCGAGCGAG GGAGCGATCA CGCGGGTACA GGGGGTGGGA
TCGTTTGTCG CTGCCCATAA AGGAAGCACG GCCCTTCTGG AGGTCCGCAA TATTGCCGAC
GAGATCCGCG AGCGCGGCCA CAGGCATACC TCGCGGACAG CGCTCATGGA AGAGGAGCAG
GCAAGCCCCG AAATCGCGGA GGCGCTCGGG CTTACGACTA AGGCGCGGGT CTTTCACTCG
ATCATCGTTC ATGCGGAGAA CGACGTTCCG ATCCAGATCG AAGACCGCTT CGTCAATCCC
GCAATCTGCC CCAATTATCT GGAACAGGAT TTTGCCAGCA TGACCCCGAA CGTCTATCTG
ACCCTGGTGG CGCCGATCAC GCGCACGGAG CAGATCGTCG AGGCCGTGCA GCCAAAGCCG
TGGGAATGCA AGCTTCTTTC GATCAGCCGC GGCGAGCCGT GCCTGATGAT CCGCCGCCGG
ACCTGGTCGG AAACCGCGAA TGTGACGGTC GCACGTCTTG TTTATCCGGG CACACGCTAT
CGTCTCGAGG GTGTTTCGCA GTAA
|
|---|
| Protein sequence | MAVLGRRSDR AVFDDGPVPR YEAVKQFIRS RIESGEWPPH HRIPSENDIV ADLGVSRMTA
NRALRELASE GAITRVQGVG SFVAAHKGST ALLEVRNIAD EIRERGHRHT SRTALMEEEQ
ASPEIAEALG LTTKARVFHS IIVHAENDVP IQIEDRFVNP AICPNYLEQD FASMTPNVYL
TLVAPITRTE QIVEAVQPKP WECKLLSISR GEPCLMIRRR TWSETANVTV ARLVYPGTRY
RLEGVSQ
|
|---|
| |