| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_2567 |
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| Symbol | xerD |
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| ID | 5323435 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009636 |
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| Strand | + |
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| Start bp | 2663698 |
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| End bp | 2664639 |
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| Gene Length | 942 bp |
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| Protein Length | 313 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640791510 |
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| Product | site-specific tyrosine recombinase XerD |
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| Protein accession | YP_001328232 |
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| Protein GI | 150397765 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG4974] Site-specific recombinase XerD |
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| TIGRFAM ID | [TIGR02225] tyrosine recombinase XerD |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 0.615759 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGGATC TGTCGGGAGC ACACCTCGAA GCCTTCCTGG AAATGATGAG CGCCGAGCGC
GGAGCGGCCG TGAACACGCT GCAATCCTAT GAGCGGGACC TCAGGGACGC GCGTTCTTTC
CTGCGCTCGC GCGGCGTGGG GCTTGTCGAC GCCTCGGCCG ACGATCTCCG AAGCTATCTC
TCCCACCTCA CGGGTGAGGG CTTCAAATCG TCGTCGCAAG CCCGGCGGCT GTCGGCCCTC
AGGCAATTCT ACAAGTTTCT CTATGCGGAG GGGCTGCGCA CGGATGAGCC GACCGGCATC
CTTGACGCGC CGAAGAAAAA CCGCGCGCTT CCCAAGACGC TCAGCATCGA AGACGTCACA
AGGCTGATCG GCCAGGCGGA GACGGAAGCA GAAAAGGGCG GTGAGGACGC CGTCGCGAAG
CTGCGCATGC ACGCACTGAT CGAACTCCTC TACGCGACCG GCATGCGCGT CAGCGAGCTC
GTTTCGCTGC CGGCGAGCGT GCTTGCGCAA GACGGGCGTT TCCTCATAAT TCGCGGCAAG
GGTAACAAGG AAAGGCTCGT ACCGTTGTCG CAGACGGCGA TCCGGGCTAT GCGGGCCTAT
GGCCAAGCAC TGCACAGAGA GGCCGACGGC GCCGATAGCC CCTGGTTGTT CCCCTCCTAT
GGCAGGAACG GGTATCTGCC GCGGCAGGTC TTCGCCCGCG ACCTCAAGAG CCTCGCCGCA
CGTGCCGGAA TTCGCGTCGC GGCGATCTCT CCGCACGTGC TGCGACACGC CTTCGCGAGC
CATCTTCTCG CCAACGGCGC CGACCTTCGC GCCGTGCAGG AACTGCTCGG CCATTCGGAC
ATTTCCACCA CACAAATCTA TACGCATGTG CTGGAAGAAC GGCTTCACGA CCTCGTGCAA
AGCCATCACC CCCTTGCCAA ACAGGCGAAA AAGCAGGATT AG
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| Protein sequence | MTDLSGAHLE AFLEMMSAER GAAVNTLQSY ERDLRDARSF LRSRGVGLVD ASADDLRSYL
SHLTGEGFKS SSQARRLSAL RQFYKFLYAE GLRTDEPTGI LDAPKKNRAL PKTLSIEDVT
RLIGQAETEA EKGGEDAVAK LRMHALIELL YATGMRVSEL VSLPASVLAQ DGRFLIIRGK
GNKERLVPLS QTAIRAMRAY GQALHREADG ADSPWLFPSY GRNGYLPRQV FARDLKSLAA
RAGIRVAAIS PHVLRHAFAS HLLANGADLR AVQELLGHSD ISTTQIYTHV LEERLHDLVQ
SHHPLAKQAK KQD
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