| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_2495 |
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| Symbol | |
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| ID | 5323356 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009636 |
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| Strand | - |
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| Start bp | 2579143 |
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| End bp | 2581281 |
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| Gene Length | 2139 bp |
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| Protein Length | 712 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 640791432 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_001328161 |
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| Protein GI | 150397694 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | [TIGR01783] TonB-dependent siderophore receptor |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 0.237347 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACATTTT CTAAGAGATT GCAGCCGTTT CTTGGCTGCA CGGCAATCGC AATCGTCGCA
ACGGCAGTAT CGATCGGGCC AGGCACGCGC ATTGCGATGG CTCAGGACGC GACGCCGAGC
GATGAGGATG CCGCGACGAC GCTGGCGCCG ATTATCATCA CTGGCGAGAA ATTCGGCCGT
GATCAGTTCA CCACCTTCAC CAGTGTCGAG GTTTTCACAG GCGGAGAACT TCACGATCTC
GTCCGACCGA CACTCAATGA TGCGCTGAAC AGCTCACCCA ACATCCGTGC CTTCATGAGT
GGCAGAGGTA ATTCCGACAT TGTCATCCGC GGTTTGAGCT CGGAGGGTGT AACGGCTCCG
AGCCGCTCGA ACCCGGTGAT TTCGGTGGTC GTGGACGGCG CAGAACAGGG TGTCGAGGCA
ACCCGGCGCG GGACGCGAGG CCTCTGGGAC GTCGAGCAGG TCGAAGTATT GCGTGGTCCG
CAATCTACGC TTCAGGGACG CAACGCGCTC GCGGGATCCG TCATCATCAA GACGAAAGAT
CCGACTTATA CCCCCGAAGC CAGTATTGAA GGCCTGATCG GAACCGACGA GTACAAATCC
GGCGCCTTTG CCGTTTCGGC GCCGATCGTC GAAGACGAGC TGGCATTTCG TATCTCCGGG
CAAATCTTTC GCCGGGACAA CGACATCGAC TATGTCGATC CGTCCATTTC GGACGTGGGC
GAAGAGGAGT TCGAGGAAAT TCGCGGCAAG CTGCTCTGGG AGCCTGCAGA AATACCGGGC
CTCCGGGGGC TGTTTACCGT TAGCCGTACG CATGACAAAC CGGCATGGGC TCTGGTGAGC
GGTCCCGATT TCTTCGCCAG ACGATTCGAT GATACGACTG CAGAACGGCG CGATACTTAC
GTTAACCGCT ACATCGCCGA CCTGACCTAC GAGATCAACG AGGACTGGAA GATTCAGTCG
ATTACGTCGT TCGTAGACAC GGACGTGGAG ATTACTTCTC CTCAAACGCC GACGCTTCAA
CAGTTCCAAC TCATCCGTGA TGACACACGC GAGGGCGGAG ACTTCTCCCA GGATATCCGT
CTCACTTACG GATCGGCGGA GTCTCAATTT TCGGGCGTCT TCGGTCTTTT CGCAGGCCGA
TCCACCTTCG ATCTCGACTC GAACATCCGG GTGGTGGCAG ATCCAGTCAC CCCGTTCATC
TTGCCGTTCC AGCAGCTACA GGCGAAGAAC AAGAGCGAGA CGACCGCTCT GTACGCGGAC
ACCCGCTACG AGTTTGTCGA TCGATGGACG CTGCTGGCCG GCGGTCGGCT GGTCCATGAC
AAGGTCTCGG CCAACTACAC GGGCAGCCTG CTGGACGCCT CCACCTTCGG ATATGTTCCG
CTTACGGAGA ACAATTCGGT CTCAAACACC GAATTCCTGC CCAAGATCGG CCTTGCCTTT
GAACTCGACG AGAACCAGAA TCTCGCCGCT ACCATCAGTA AAGGCTACCG CCCGGGCTAT
TCGGAACTCA TTATCGGCAC GACCGACATC AATACGGTCA GGCCGGAATC TCTCTGGGCC
TATGAACTTG CTTATCGTTC CAAGTGGCTG GAGGACCGTC TGCAGGTGAA CGGGAACGTC
TTCTACTACG ATTACACGAA CCAGCAGGTT CCAATCGAAT TCGATCCTCG CTTCCCAGCC
CAGACGATCA GTCTCAATGC AGCCGAATCT CATTCCTATG GTGCCGAAAT CGAAGTTCGT
TACGGCTTCG ATTCTGGCCT AGAGCTCTTC TCTGGGCTCG GCCTCATGAA GTCGAAGTTT
GATAAGGGCG ACTTCAAGGG CAAGGAATTT CCCGAAGCGC CATCGCTCAC CGCCTCTTTC
GGTGGCGTCT ACAAGCATGA AAGCGGTTTC TTCGCAGGCG GCGACGTGTC CTTCACGGAC
GGCTACTACA GCAAAGGCGA CGTGAAGAAT GTTCGTGCCC TGGATTCGTT TACTGTTGTA
AATGCGAATA TCGGCTACGA AAAAGACAAC TTGAAGATCA CTGCGTTTGC CAGGAATCTG
TTCGACGAGG AATACCTGAC CTCGATTTCG AGCAATGGCA ACCTGGCGAC CATCGGCGAC
GGGCGCTCGT TCGGCGTACG CGTCAACGCC ACCTTCTGA
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| Protein sequence | MTFSKRLQPF LGCTAIAIVA TAVSIGPGTR IAMAQDATPS DEDAATTLAP IIITGEKFGR
DQFTTFTSVE VFTGGELHDL VRPTLNDALN SSPNIRAFMS GRGNSDIVIR GLSSEGVTAP
SRSNPVISVV VDGAEQGVEA TRRGTRGLWD VEQVEVLRGP QSTLQGRNAL AGSVIIKTKD
PTYTPEASIE GLIGTDEYKS GAFAVSAPIV EDELAFRISG QIFRRDNDID YVDPSISDVG
EEEFEEIRGK LLWEPAEIPG LRGLFTVSRT HDKPAWALVS GPDFFARRFD DTTAERRDTY
VNRYIADLTY EINEDWKIQS ITSFVDTDVE ITSPQTPTLQ QFQLIRDDTR EGGDFSQDIR
LTYGSAESQF SGVFGLFAGR STFDLDSNIR VVADPVTPFI LPFQQLQAKN KSETTALYAD
TRYEFVDRWT LLAGGRLVHD KVSANYTGSL LDASTFGYVP LTENNSVSNT EFLPKIGLAF
ELDENQNLAA TISKGYRPGY SELIIGTTDI NTVRPESLWA YELAYRSKWL EDRLQVNGNV
FYYDYTNQQV PIEFDPRFPA QTISLNAAES HSYGAEIEVR YGFDSGLELF SGLGLMKSKF
DKGDFKGKEF PEAPSLTASF GGVYKHESGF FAGGDVSFTD GYYSKGDVKN VRALDSFTVV
NANIGYEKDN LKITAFARNL FDEEYLTSIS SNGNLATIGD GRSFGVRVNA TF
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