Gene Smed_2472 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_2472 
Symbol 
ID5323333 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009636 
Strand
Start bp2553948 
End bp2554706 
Gene Length759 bp 
Protein Length252 aa 
Translation table11 
GC content64% 
IMG OID640791410 
Productshort-chain dehydrogenase/reductase SDR 
Protein accessionYP_001328139 
Protein GI150397672 
COG category[R] General function prediction only
[Q] Secondary metabolites biosynthesis, transport and catabolism
[I] Lipid transport and metabolism 
COG ID[COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.117337 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones38 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAGAGA TCATCGATAC GTTTCGTCCA GACCTGTTTG CCGGCAGGGA TATTCTGATT 
ACCGGCGGTT CGTCCGGCAT CGGCCTTGCC ATCGCGCAGG GTTTTGCCCG GCTCGGCGGC
ACGGTCATCG CGCTGGGCAG CTCTGAATCC AAGCTCAAGG CCGCCGCGGC CGATCCGGAA
AACAAGGGCA TCCGCTTCGA GCGCGTCGAC GTGCGCGATC CGGAAATGAT CAACGCATTC
GCCAAGACTC TCGGCAAGCT CGACGTTCTC ATCAACGGCG CAGGCATCGC CCGGCCCGAG
GCGGAATTCG AGGACGCGAC CTACATGGAG GTGATGGACG TCAACCTGAA CAGCCAGATG
CGCTTCGCCA TGGCCGTCCT GCCGCTCCTG AAAGCCTCGC GCGGCGTCAT CCTCAACACC
GCCTCCATGC TGAGCTATGT CAGCGATCCG CTCGTGCCGG CCTATGGCGC CAGCAAATCG
GGCGTGCTCG GCCTCACTCG CCATCTCGCC CACGCCTTCG GCCCGGATGG CATCCGCGTC
AACGCCATCT CTCCCGGCTA TCACAAGACG GACATGACCA GGGGTCTGTG GACCGACCCG
GTGCCGGCCG AGAAAATCGC CCAGCGTTCA GCGCTCAAGC GCTGGGGTAC GGTGGATGAC
CTTGTTGGAA CCGCGCTCTT CCTGGCCTCG CCGGCCGCGG AATTCATTAC CGGCGCCGAC
CTGCCGGTCG ATGGCGGTTT CGTGGTCGGC AGCTTCTGA
 
Protein sequence
MKEIIDTFRP DLFAGRDILI TGGSSGIGLA IAQGFARLGG TVIALGSSES KLKAAAADPE 
NKGIRFERVD VRDPEMINAF AKTLGKLDVL INGAGIARPE AEFEDATYME VMDVNLNSQM
RFAMAVLPLL KASRGVILNT ASMLSYVSDP LVPAYGASKS GVLGLTRHLA HAFGPDGIRV
NAISPGYHKT DMTRGLWTDP VPAEKIAQRS ALKRWGTVDD LVGTALFLAS PAAEFITGAD
LPVDGGFVVG SF