Gene Smed_2448 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_2448 
Symbol 
ID5323309 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009636 
Strand
Start bp2530702 
End bp2531493 
Gene Length792 bp 
Protein Length263 aa 
Translation table11 
GC content68% 
IMG OID640791386 
Productshort-chain dehydrogenase/reductase SDR 
Protein accessionYP_001328115 
Protein GI150397648 
COG category[R] General function prediction only
[Q] Secondary metabolites biosynthesis, transport and catabolism
[I] Lipid transport and metabolism 
COG ID[COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.117337 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones32 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCGACCA GTTCATCCGC TGACGGGCGG ACCCGCGCGA CCGGCAGTCC CGCCGCCTTC 
CTGCGCCCCG GCCTTTTCGA AGGGCGGCAG GTGCTGGTGA GCGGCGGGAC CTCAGGTATC
GGCGCTGCGA TCTGCGAGGC CTTCGCCGCG CTCGGGGCCG ATGTCCTCGC AACGGGCATC
ACCGAGGCGG AGATTGCCGC CGCCGGAAGC CGGCCCGGAC TTCAGGACGT GCAGTTCGCC
ACGCTCGACG TGCGCGACAG GTCTGCCGTG GATGCTCTGG TCGCCGGCCT GCCGCGGCTG
GACCACGTGG TGAACTGCGC CGGCGTGATC CGCCGCAATG ACGAACTCGA GCCGGATGTG
TTCGCCGACG TCGTCGATAT CAATCTCAAC GGCTCCATGC GCGTCTGCGC GGCAGCCCGT
CCACGGCTTG CGGAAACCGG CGGCACGATC GTCAATACCG CCTCCATGCT GTCGTTCTTC
GGCGGTGGCC TGGTGCCCGG CTATTCCGCA TCGAAGGGCG GCATCGCCCA GCTCACCAAA
TCGCTGGCGA TCGCCTATGC GGCCGATGCA ATCCGGGTGA ATGCCATCGC GCCGGGTTGG
ATCGCGACAC CCCTGACGAA GGCGCTACGG GAGAGCCCGG AGCGCAACGC GGCCATTCTC
GGCCGCACGC CGCTCAATCG CTGGGGAGAG CCGGCGGAAG TCGCCGGTGG CGTTCTTTAT
CTGTCCTCGC CGCTTGCAAG CTTCGTTACC GGCAGCGTGC TGGTCATCGA TGGCGGCTAT
CTGATCATGT GA
 
Protein sequence
MSTSSSADGR TRATGSPAAF LRPGLFEGRQ VLVSGGTSGI GAAICEAFAA LGADVLATGI 
TEAEIAAAGS RPGLQDVQFA TLDVRDRSAV DALVAGLPRL DHVVNCAGVI RRNDELEPDV
FADVVDINLN GSMRVCAAAR PRLAETGGTI VNTASMLSFF GGGLVPGYSA SKGGIAQLTK
SLAIAYAADA IRVNAIAPGW IATPLTKALR ESPERNAAIL GRTPLNRWGE PAEVAGGVLY
LSSPLASFVT GSVLVIDGGY LIM