Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smed_2396 |
Symbol | |
ID | 5323257 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sinorhizobium medicae WSM419 |
Kingdom | Bacteria |
Replicon accession | NC_009636 |
Strand | - |
Start bp | 2471419 |
End bp | 2472804 |
Gene Length | 1386 bp |
Protein Length | 461 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 640791334 |
Product | inner-membrane translocator |
Protein accession | YP_001328063 |
Protein GI | 150397596 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG4177] ABC-type branched-chain amino acid transport system, permease component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 0.00825655 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | ATGGCAAATG TCGCATCCAC CACCGCAAGC GCCGGCAGCG AACTGACGGC GCGGGCGCTT CGCGAGGCTG TTTTTGCGGG CCTCATCACG CTTGGACTGT TCGTGCTCTT CGTCGGGCTC AAGTCCGACC AGAACATCCG CAACGAACTC ATTCTCACCC AGCGCTGGGG ACTGCTTGCG ATATTCGTGG CGGTTGCCAT GGTTGGCCGT TTCCTCATCG TTGTCTATGT GCAGCCGCGG TTCGCCAAAC GGAAGGCGGC AAAGGCGGCC GCGCCCGACG TGGTGAAGAA GGACACCTTT TTCACCCGCC AATGGCCGAA GATCGCGGTC GTCATGCTGC TGCTTTACCC CCCGGTCATC GTCTCGTTCG TGGGCGTCCA GGGGTCGCTG AAATGGGTCG ACAATTTCGG CATTCAGATC CTGATCTACG TGATGCTTGC CTGGGGCCTC AACATCGTCG TCGGTCTCGC CGGGTTGCTC GATCTCGGCT ATGTGGCCTT CTATGCCGTG GGCGCCTATT CCTACGCGCT TCTCTCCAGT TATTTCGGAC TTTCCTTCTG GGTGCTGCTG CCTGTCGCCG GACTTCTCGC CGCCCTCTGG GGCATCGTTC TCGGCTTCCC GGTGCTGCGC CTCAGGGGTG ACTATCTGGC GATCGTCACG CTCGCTTTCG GAGAGATCAT CCGCCTCGTG CTGATCAACT GGACCGAGGT TACCAAGGGG ACATTCGGCG TCTCCGGCAT CGCCAAGGCG ACGCTTTTCG GCATCAAGTT CGATGCTTCG AAGGATGGTT TTGCGGCGCT CTTCGACTTG CCTCTCTCTT CGGCCTATTA CAAGATCTTC CTGTTCTATC TGATCCTCGC GCTCGCCCTT CTGACCGCCT TCGTAACGAT CCGGCTGCGC CGAATGCCGA TCGGGCGCGC ATGGGAGGCG TTGCGCGAAG ACGAGATCGC CTGCCGTTCG CTCGGCATCA ACACTGTCAC CACCAAGCTG ACGGCCTTTG CGACGGGTGC GATGTTCGGC GGGTTTGCAG GCTCCTTTTT TGCCGTGCGT CAGGGCTTCG TCTCGCCGGA ATCCTTCGTC TTCCTGGAAT CGGCCGTCAT CCTTGCCATC GTCGTTCTTG GCGGCATGGG CTCGCTGACC GGTATCGCCA TTGCCGCCGT CGTTATGATC GGCGGCACCG AAATCCTGCG TGAGCTGACG TTCCTCAAGA TGATCTTCGG ACCGGCCTTC ACACCCGAAC TCTATCGCAT GCTGATCTTC GGCCTGGCCA TGGTGACGGT CATGGTCTGG AAGCCGCGTG GCTTCGTCGG ATCACGAGAG CCGACCGCGT TCCTGCGCCA ACGCAGGGCA GTCTCCGGCA GCTTCACCAA AGAGGGGCAC GGCTGA
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Protein sequence | MANVASTTAS AGSELTARAL REAVFAGLIT LGLFVLFVGL KSDQNIRNEL ILTQRWGLLA IFVAVAMVGR FLIVVYVQPR FAKRKAAKAA APDVVKKDTF FTRQWPKIAV VMLLLYPPVI VSFVGVQGSL KWVDNFGIQI LIYVMLAWGL NIVVGLAGLL DLGYVAFYAV GAYSYALLSS YFGLSFWVLL PVAGLLAALW GIVLGFPVLR LRGDYLAIVT LAFGEIIRLV LINWTEVTKG TFGVSGIAKA TLFGIKFDAS KDGFAALFDL PLSSAYYKIF LFYLILALAL LTAFVTIRLR RMPIGRAWEA LREDEIACRS LGINTVTTKL TAFATGAMFG GFAGSFFAVR QGFVSPESFV FLESAVILAI VVLGGMGSLT GIAIAAVVMI GGTEILRELT FLKMIFGPAF TPELYRMLIF GLAMVTVMVW KPRGFVGSRE PTAFLRQRRA VSGSFTKEGH G
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