Gene Smed_2248 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_2248 
Symbol 
ID5323109 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009636 
Strand
Start bp2325437 
End bp2326399 
Gene Length963 bp 
Protein Length320 aa 
Translation table11 
GC content63% 
IMG OID640791186 
ProductLysR family transcriptional regulator 
Protein accessionYP_001327915 
Protein GI150397448 
COG category[K] Transcription 
COG ID[COG0583] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.462301 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones32 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGATCGAC AGGAGGCGAT GGCGGTGTTT CTCGCCGTTG TCGAGGAGGG GGACTTCTCG 
GCGGCTGCCC GGCGGCTGCG AATGACGCCA TCCGCCGTCA GCAAAATCGT TGGCCGGCTC
GAATCCCGGC TCGGAGTTCG GCTGTTGCAG CGCTCGACCC GCAGTATCAG CCTTACGGCC
GAGGGAAATT CCTATTCGGA GTCGGTCCGG CGCATTCTCG GCGATATGGA AGAGGCCGAG
CTGGCGATTC AGCCGGGCGC CGAGCCGCGC GGCCGATTAC GCGTCAGTCT TCCAAGTGCA
TTCGGCCATC GTCTGATCGT CCCGATGCTG CCGGCCTTCA TCGGACGCCA TCCGGCCATC
GAACTTGAAC TGGATTTCAC CGACGCGATC GTCGATCTCG TAAATGGCGA TGCGCACGTG
GCGGTGCGTG TGGCTGCCCA AGGCGACTCC ACGCTCGTCA CGCGGCGTCT GGCCCCCAAT
AGGCGCGTCA TCTGCGGTGC TCCTGATTAC TTCGAGCGTC ATGGTGTCCC CATGAGGCCC
GACGACCTCC TGAAGCACAT CTGCCTCGGC ATTTCGTCGC GTGGTGGGCT CAACCTGTGG
GAGTTCGATG AAGCTGGCGG CCGCCGGTCG ATGCGCATTC GAAGTTCGAT CGAGGCCAAC
AGCACGGAAG CACTGCGCCG GCTTGCGCTT GCCGGAATGG GGATTGTGCG GCTTTCGGAG
ATGCTGGTCG GGCAGGACAT CAGGGCTGGG CGCCTGAAGC CGGTGCTCAC GGACTGCAAT
CATGCCGAGG CCGAGCCGAT CAGCGTCGTC TATCCGCATC GCCGGTTCCT CTCGCCACGG
GTGCGCGTAT TCGTCGATTT CCTCGCTGAA CAATTTGCAA AATCGATCGC AGAAGGAGGC
GATGCTGCCC GTGTGATACG AGGTACATCC GGCGGTCTTC CCGAATCCGA CGCAATGCGT
TAA
 
Protein sequence
MDRQEAMAVF LAVVEEGDFS AAARRLRMTP SAVSKIVGRL ESRLGVRLLQ RSTRSISLTA 
EGNSYSESVR RILGDMEEAE LAIQPGAEPR GRLRVSLPSA FGHRLIVPML PAFIGRHPAI
ELELDFTDAI VDLVNGDAHV AVRVAAQGDS TLVTRRLAPN RRVICGAPDY FERHGVPMRP
DDLLKHICLG ISSRGGLNLW EFDEAGGRRS MRIRSSIEAN STEALRRLAL AGMGIVRLSE
MLVGQDIRAG RLKPVLTDCN HAEAEPISVV YPHRRFLSPR VRVFVDFLAE QFAKSIAEGG
DAARVIRGTS GGLPESDAMR