| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_2184 |
|---|
| Symbol | |
|---|
| ID | 5323044 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009636 |
|---|
| Strand | + |
|---|
| Start bp | 2258719 |
|---|
| End bp | 2260716 |
|---|
| Gene Length | 1998 bp |
|---|
| Protein Length | 665 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 640791122 |
|---|
| Product | peptidase S15 |
|---|
| Protein accession | YP_001327852 |
|---|
| Protein GI | 150397385 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2936] Predicted acyl esterases |
|---|
| TIGRFAM ID | [TIGR00976] putative hydrolase, CocE/NonD family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.173724 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTCGATC GCAATTTCAG CGTCATCGAA AACGAATGGA TCACCCTCAA GGACGGAACC
CGGCTTGCCG CTCGCATCTG GATGCCTGAA GGGACCGAGC AGAGCCCGGT TCCGGCGGTG
CTGGAATATC TCCCCTATCG CAAGCGCGAC GGCACCTGCG CAAGGGACGA ATCGACCTAC
CCGGCCTTCG CGGCGGCTGG CATCGCCGGC GTGCGCGTCG ATATCCGCGG CTCGGGCGAA
TCCGAGGGCG TGATCGACGG CGAATACACA CCGCGCGAAT TATCCGACGG CTGCGAAATC
ATCGAATGGA TTGCGGCGCA GCCCTGGTCG AACGGCAAGG TTGGTATGAT GGGCATTTCC
TGGGGCGGCT TCAACTGTCT GCAGGTGGCG GCTCTCAAGC CCGCGGCGCT GAAGGCGGTC
ATCTCGATCG CCTCGACCGT CGACCGCTAC AATGACGACA TCCACTACAA GAACGGCTGC
CATCTTTCCG CTCAGCTCTC CTGGGCCGCG ACCATGCTCG CCTACCAGTC CCGATCCCCC
GATCCGGAAC TCGTCGGTGA GGGCTGGCGG GAGATGTGGC TGCAGCGACT CGAGAACGAG
CCCTTCTTCC TGGAGGAATG GCTGGAGCAC CAGCGCCGCG ACGACTTCTG GCGGCATGGC
TCGATCTGCG AAGATTTTGA AAGCTTCCAG ATCCCGGCGC TGGTGATCGC CGGCTGGGCG
GACGGCTACC GCAACACGCC GGTCAAGGCG GTCGAGGGCT TGGGCGGCAG GGCCAAGGCG
CTCATCGGTC CATGGGTCCA CAAATATCCG CATTTCGCCT GGCCGAAGCC GCGGGCGGAC
TTTCTCGGAG AGGCGATCCG CTGGTGGAAC CGCTGGCTTC GTGACGAAAT GAACGACGCC
GAGCAGGTGC CGCAGATGCG CGCCTATATC CTCGACGGCC CAAGACCCTC GGTCAGGCGC
AATGAAGATC CGGGCCGCTG GATCGCCAAG GACATCTGGA GGACGCCGGA GTTGCGGGCC
TTCACCATAT CGAACGACGG GAGCCTGGCC GCTCAGCCGG CACCGGGACG CGGGGTCGGC
GATGTCTACC TCCGATCGCC GCTCGACACC GGCACTGCTG CCGGTGAGTA TTTCACGCTG
AAGCCGGACG CGGAGATGCC CGGCGACCAG CGCATCGATG ATGCGGGCTC GCTGACTTTC
GACACACATC CCCTGCTCGA GGCGGAGGAT TATCTCGGCC AGCCTGTGCT CGACCTCGAG
CTTTCCTGCG CTTCCGACAC TGCCAATCTC GTCGCGCGGA TCGTCGACGT CCACCCGGAC
GGTACGGCGA CCCGCGTCGC CTTCGGCGTC CTCAACCTGG CGCATCGCAG CGGCAATGCG
AAGCCGGTGC CGATGGAGAA AAACAAGAAG ACGCATGTTT CGCTGGTGCT CGACGCCTGC
GGCTATCGCT TCCGTGCCGG TCACCGCATC CGTTTGTCGC TGTCGACTTC CTATTGGCCG
ATAATCCTTC CGTCACCGAC CGATCCCGGC CTGGCGATCG ACACGACCAG CATCTCGCTT
TCGCTGCCGC TTCTCGGGGA ACATCGCGAG ATCGTGGTGC CGCAGCCCGC CAACCCCGAC
CCGTTGCCGC ATTATATCGA GCATTCGCCT GCCGAAACGC GCCGCACCGT CGAGCGCGAT
ATGACGAAGT GCCTGACGCA TTACCGCGTC TACGAGAATA CCGGCCTCGT CGAGCATCCC
GGCACGGGCA ATGCGACCCA GGACATCCGC GACGAAACCT GGACGATCGC GCCGGACGAT
CCGAATTCGA TGACGGGCGT ATCCACCTGG ACCTGTGTCG CGCGCCGTGG GCAGCAATCG
CTGAAGACCG TCTCTACCTC CCGCCTCGGC TGTACGGAAA CCGAGTGGAT CACCTCCGCT
CAGGTCGAGG CGTTCGAGGG TGAAGAGAAG ATCTTTGAGA AGAGCTTCGA GAAGCGGATC
CGGCGCGATT TCATGTGA
|
|---|
| Protein sequence | MVDRNFSVIE NEWITLKDGT RLAARIWMPE GTEQSPVPAV LEYLPYRKRD GTCARDESTY
PAFAAAGIAG VRVDIRGSGE SEGVIDGEYT PRELSDGCEI IEWIAAQPWS NGKVGMMGIS
WGGFNCLQVA ALKPAALKAV ISIASTVDRY NDDIHYKNGC HLSAQLSWAA TMLAYQSRSP
DPELVGEGWR EMWLQRLENE PFFLEEWLEH QRRDDFWRHG SICEDFESFQ IPALVIAGWA
DGYRNTPVKA VEGLGGRAKA LIGPWVHKYP HFAWPKPRAD FLGEAIRWWN RWLRDEMNDA
EQVPQMRAYI LDGPRPSVRR NEDPGRWIAK DIWRTPELRA FTISNDGSLA AQPAPGRGVG
DVYLRSPLDT GTAAGEYFTL KPDAEMPGDQ RIDDAGSLTF DTHPLLEAED YLGQPVLDLE
LSCASDTANL VARIVDVHPD GTATRVAFGV LNLAHRSGNA KPVPMEKNKK THVSLVLDAC
GYRFRAGHRI RLSLSTSYWP IILPSPTDPG LAIDTTSISL SLPLLGEHRE IVVPQPANPD
PLPHYIEHSP AETRRTVERD MTKCLTHYRV YENTGLVEHP GTGNATQDIR DETWTIAPDD
PNSMTGVSTW TCVARRGQQS LKTVSTSRLG CTETEWITSA QVEAFEGEEK IFEKSFEKRI
RRDFM
|
|---|
| |