Gene Smed_2156 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_2156 
Symbol 
ID5323016 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009636 
Strand
Start bp2224913 
End bp2226466 
Gene Length1554 bp 
Protein Length517 aa 
Translation table11 
GC content63% 
IMG OID640791094 
Productglycerol-3-phosphate dehydrogenase 
Protein accessionYP_001327824 
Protein GI150397357 
COG category[C] Energy production and conversion 
COG ID[COG0578] Glycerol-3-phosphate dehydrogenase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones37 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACGTCGA CAGGAGACAA ACACGTGAGT TCCGAAACCG GCACATACGA CCTTTTCGTC 
ATTGGCGGCG GCATCAACGG GGCAGGCATT GCCCGAGACG CGGCGGGGCG CGGGCTTTCC
GTCCTGCTTT GCGAAAAGGA AGATCTGGCA CAGGGCACGA GTTCCCGCTC CGGCAAGCTC
GTCCACGGCG GCTTACGCTA TCTCGAATAT TACGAGTTCC GCCTGGTGCG CGAGGCGCTG
ATCGAGCGGG AGGTGCTGCT GGAGTCGGCA CCTCATATCA TCTGGCCGAT GCGTTTCGTG
CTGCCGCACA ATCCGACCGA CCGGCCCGCC TGGCTCGTGC GCCTCGGCCT GTTTCTCTAT
GATCATCTGG GTGGGCGCAA ACGCCTTCCC GGTACGCGGA TGCTCAACCT GCGCACGGCG
CCGGAAGGTG CTCCGATCAA GCCGGCCTAT CGCAAAGCCT TCGAATATTC GGACTGTTGG
GTAGACGACG CCCGTCTGGT CGTGTTGAAC GCGCTCGACG CGAAAAACAA AGGCGCGCGG
GTCCTGACCC GTACCGCCTG CACCAGCGTT CGCCGGCGCG GCGAACTCTG GCATGTCGAG
ATGACCGATG CGGAGACCGG GGCCAGGACC GAAGCCAAAG CGCGTTGCGT GGTCAACACT
GCCGGGCCCT GGGTCAACGA CGTGATCGGC CGGGTCGCAG GACTGAATTC GAGCCGCAGC
GTTCGCCTCG TCAAGGGCAG CCATATCGTC GTGCCGAAGT TCTGGGAGGG GCGTCAGGCC
TATCTGGTCC AGAATCCCGA CAAGCGCGTG ATCTTCATCA ATCCGTACCA GAACGACCTG
GCGCTGATCG GCACCACCGA TATTCCCTAT GAGGGGCGGC CGGAGGACGT GTCCGCCGAC
GATAGCGAGA TTGATTATCT CCTGACGTCC GTGAACCGCT ATTTCAAGCA GCAAATGACG
CCGCGCGACA TCCTTCACAG CTTCTCCGGT GTTCGGCCGC TTTACGACGA CAATGCCGAA
AATCCGTCGG CAGTGACGCG CGACTACATT TTCGAGCTCG ATGCCCCGCA AAAGGGCGCC
GCCGGGAGGG AAGCGCCGCT GCTCTCGGTA TTTGGCGGCA AGATCACGAC CTTCCGCAAG
CTGTCCGAAC ACGCCTTGGA GCGACTGAAG CCCTTCTTTC CCGAGATGGG GCCGGCTTGG
ACGGCGCGCT CGCACCTGCC GGGAGGCGAT ATGGCGGAAG CGGATTTCGA CCAGTTCCTC
GGCGAGCTGC GCACACGCCA CCAGTGGTTG CCGGCGGATC TCGCCAAGCA TTATGCAAGG
CTGTACGGCA CGCGCGCCGA TGAGCTGATC GGCAGCGCTG CCTCGCTCGA GGAGCTCGGC
ACTGCGTTCA CCCCCCTCTT CAGGGAACGG GAAGCCCGCT TCCTCATCGA AAATGAATGG
GTGCGCACGG CGGAAGACCT GATCGAACGC CGTACGAAGC ACGGCCTGCA TATGAGCGAA
ACGGAGAAGC GGGCGTTCAG CGGCTGGTTC CAGGGTCAGC AGGCGGCGGC GTGA
 
Protein sequence
MTSTGDKHVS SETGTYDLFV IGGGINGAGI ARDAAGRGLS VLLCEKEDLA QGTSSRSGKL 
VHGGLRYLEY YEFRLVREAL IEREVLLESA PHIIWPMRFV LPHNPTDRPA WLVRLGLFLY
DHLGGRKRLP GTRMLNLRTA PEGAPIKPAY RKAFEYSDCW VDDARLVVLN ALDAKNKGAR
VLTRTACTSV RRRGELWHVE MTDAETGART EAKARCVVNT AGPWVNDVIG RVAGLNSSRS
VRLVKGSHIV VPKFWEGRQA YLVQNPDKRV IFINPYQNDL ALIGTTDIPY EGRPEDVSAD
DSEIDYLLTS VNRYFKQQMT PRDILHSFSG VRPLYDDNAE NPSAVTRDYI FELDAPQKGA
AGREAPLLSV FGGKITTFRK LSEHALERLK PFFPEMGPAW TARSHLPGGD MAEADFDQFL
GELRTRHQWL PADLAKHYAR LYGTRADELI GSAASLEELG TAFTPLFRER EARFLIENEW
VRTAEDLIER RTKHGLHMSE TEKRAFSGWF QGQQAAA