Gene Smed_2050 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_2050 
Symbol 
ID5322909 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009636 
Strand
Start bp2101188 
End bp2101652 
Gene Length465 bp 
Protein Length154 aa 
Translation table11 
GC content59% 
IMG OID640790987 
Productputative CheW protein 
Protein accessionYP_001327718 
Protein GI150397251 
COG category[N] Cell motility
[T] Signal transduction mechanisms 
COG ID[COG0835] Chemotaxis signal transduction protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.143061 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value0.348957 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCAACG CAATCAAACA GTCAGGCGCC TACCTTGAAA TCGTCTCCTT TCATCTGGGC 
GACCAGGAAT TCTGCATAGA CATCATGGCG ATCCGAGAAA TTCGCGGCTG GGCGCCGGTG
ACGCCGATGC CGCACACCCC TCCCTATGTC CTAGGTCTCA TCAACCTGCG CGGCGCAGTG
ATCCCCGTCA TCGACATGGC CTGCCGCCTT GGGATGAAGA TGACCGAGCC GTCCGAGCGC
TCCGCGATCA TCGTTACCGA TATCAATGGC AAGCTCGTCG GGCTCCTGGT CGAGAAGGTC
TCGGACATGA TGACGATCCG CGGCGAAGAT CTGCAGCCGG CGCCGGAGAT CATCCCGGAA
GCACAGCGAG CATTCTGCCG CGGCATAGTT GCACTTGAGA AATCGATGGT CTGCTTCCTC
AACCTCGATA CCGTCATCGC CGAGGAACTG GCGCAGGCGG CATAG
 
Protein sequence
MSNAIKQSGA YLEIVSFHLG DQEFCIDIMA IREIRGWAPV TPMPHTPPYV LGLINLRGAV 
IPVIDMACRL GMKMTEPSER SAIIVTDING KLVGLLVEKV SDMMTIRGED LQPAPEIIPE
AQRAFCRGIV ALEKSMVCFL NLDTVIAEEL AQAA