Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smed_2033 |
Symbol | |
ID | 5322892 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sinorhizobium medicae WSM419 |
Kingdom | Bacteria |
Replicon accession | NC_009636 |
Strand | - |
Start bp | 2080945 |
End bp | 2084079 |
Gene Length | 3135 bp |
Protein Length | 1044 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 640790970 |
Product | acriflavin resistance protein |
Protein accession | YP_001327701 |
Protein GI | 150397234 |
COG category | [V] Defense mechanisms |
COG ID | [COG0841] Cation/multidrug efflux pump |
TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 28 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAACATCG GCATGGGAGG TCATCATCCA GGCGGTGGGC AGGGCGGAAA GACGGGCTTC ACAGCGCTCT TCATCCGCCG GCCGATCTTC GCACTGGTGG TCAATACATT GATCGTCGTG GCTGGCCTTG CCGCGTGGAA CGGCGTGGAG ATTCGCGAGC TGCCGCAGGT GGACCAGCCG GTGGTTTCCG TCACCACCGA ATTCGACGGC GCCTCGCCGG AAACGATCGA CCGCGAGGTG ACGTCGGTCG TCGAAGGGGC CGTCTCGCGC GTGCAGGGCA TCAAGGACAT CTCGTCCACC TCGTCCTTCG GGCGCAGCCG GGTAACGCTC GAATTCTCCG ACACGACCGA TATCGGCCAG GCGGCCAACG ACGTTCGCGA TGCGCTCGGC CGGATCACCG GTCAACTGCC TGATGACGCC GACGAGCCTC GTATCGTGAA GGCGGATTCC GACAGCCAGC CGATCATGCG TCTGGCGCTG ACGTCGGACA CGATGAGCAT GGACGACATG ACGCTGCTCG TCGAGAACGA GATCAGCGAC CGGCTGGCGG CGGTCGAAGG CGTTGCCGAC GTCACCGTCT ACGGCGATCA GGAGAAGATT TTCCGTATCG ACGTGAACCA GGCGAAACTT GCCGGGCGCG GTGTCACCGT GGCCAACCTT CGCGAGGCGC TCGCGAATGC CTCCTACGAT GTGCCGGCGG GGTCGCTGAC GAGTGCAAAC CAGGATATTT CCGTTCGGGC GACGGCTGAT CTCCAGACGC CCGAGCAGTT CGAAAACCTG ATGCTCGGCA ATAATGTCAG GCTTCGAGAC GTCGCGACGG TGACGCTCGG CCCGGATACC GGCACTTCGG CGCTACGCTC CAACGGCCGG GAGGGAATCG GGCTCGGCAT CATCCGTCAG GCGCAGTCGA ACACGGTCGA TATCTCCCAG GGCGTGCGCA GCGTGGTGAA CGCGATTTCC TCGGATATCC TGCCTCCCGG AACCGAACTC AAGGTCACCA GCGACGATGC GGTGTTCATC AACGGCGCCA TTCATGAGGT CGAGATCGCA CTTTTCGTTG CCGTTTTCAT CGTCACCCTG GTCATCTACC TGTTCCTGCT CGACTGGCGC GCGACGCTGA TCCCGACGAT CACAATGCCG ATCGCGCTGA TCGGAACGGT AGCCGCGATC TATCTTGCCG GGTTCTCGAT CAACATCCTG ACCCTTCTGG CGATCGTGCT CGCGACCGGA CTCGTCGTCG ACGACGCGAT CGTGGTGCTC GAAAACATCG TGCGCCGCCG GGCCGAAGGG CTCGGTCCGC GCGCCGCCGC CGTTCACGGT ACCCTCGAGG TCTTTTTCGC CGTGCTCGCG ACAACCGCGA CGCTTGCAGC CGTGTTCGTG CCGCTCTCCT TCCTGCCGGG GCAGACCGGC GGCCTTTTCC GTGAATTCGG CTTCGTGCTC GCCTTCTCGA TCCTCCTGTC CTCCTTCATC TCGCTGACGC TTTGCCCGAT GCTGGCTTCG CGCATGCTGA CGAAAGAGAG GCAAGAGCAT CAGGGTGTGA TGCAGCGGTT TGGCCAGCGC GCCTCCGCCT TTTACCGGGT GACGCTCGGT GCCTGCCTCA ATGCACCGCT CATCGTCTTC GCCGTTGCGG CGTTCTTCAC CGCCGCCGGC GCCCTGGGGT TCCTGACTCT CAAGTCGGAA CTGACACCGA ATGAGGACCG CTCCCAGGTC ATGTTGCGCA TCAACGCGCC GCAGGGCGTC TCGCTGGAAT ACACACAGGC ACAGATACGT CGCATCGAGG AGGGCCTGCA GCCGTTGCTC AAATCCGGAG AGATCAGCAA TGTGTTCTCG ATTTCCGGAC AGGGCGGATC GGCCAATAGC GGCTTCATGG TCCTGACGCT CGCGCAATGG GAAGAGCGCG ATCGCACCCA AAGTCAGATC GTCGCCGACA TCAACAGAAT GACCGCGAAG ATCCCGTCCT TGCGCGCATT CACCATCCAG GCGAACAGCC TGGGTATCCG CGGCGCCGGC AGCGGCCTTC AGGTCGCGCT CGTCGGCAAC GACTACACGA AGCTCGGCGA TGCGGCGGCC AAGCTCCTCA GGGCCATGGA GGACAGTGGC CGTTTCGAGA ATGTAAGGCT GAATTACGAG GCCAACCAGG CGCAATTGTC GGTGACGATC GACCGCGAAC GCACCTCCGA CCTCGGCGTG GACATAGGCG GACTTTCCTG GGCGCTGCAG GCGATGCTCG ACGGCAGCAG CGTCGTCGAC ATCTTCGTCG AAGGGGAAGC CTACCCGGTC AAGCTGCTTT CTTCCACCGA GCCGCTCAAC GACCCGACGG ATCTGCAGAA TATCTTCATC AAGGCCGGGG ACGGCCGGAT CGTGCCGATG TCGTCGATCG CAACGATCGA GGAGAAGGCG GTGGCGCCGC AGCTTTCGCG CGAGTCCCAG CTGCGCGCCG TTTCGCTGTC GGCGGGCCTG AAATCCGACC TCGCCCTTGG CGAGGCGCTG TCGATGGTCG AAGAAATGGC CGAACCCATT CTGCCGCCGG GATCGCGGAT AATGCCTCTT GCCGAGGCCG CGACGCTGGA CGAGAACGCG AACGGTCTGT TCGTCACCTT CGGCTTCGCG ATCGTCATCA TCTTCCTGGT GCTTGCGGCG CAATTCGAAA GTTTCGTGAG CGGCCTCATC ATCATGTCGA CCGTGCCGCT GGGTCTGGCC TGCGCCATTT TCGCGATGAT CCTGACGGGC AACACGCTGA ACATCTACAG CCAGATAGGC CTCGTCATGC TTGTCGGCAT CATGGCCAAG AACGGCATTC TGATCGTCGA ATTCGCCAAC CAGCTCCGCG ACCGCGGACA GGACGTTCGC AGCGCCATAG AGAACGCAGC CAATATCCGT CTCCGGCCGG TCATGATGAC GATGATCGCG ACTGTCGTCG GCGCGGTACC GCTGGTGCTG GCAAGCGGTG CCGGTGCCGA AGCGCGCATC GCTCTCGGCT GGGTGCTCGT CGGCGGGTTG GGCCTGGCGG TGATCGTGAC CCTGTATCTG ACGCCGGTCG CCTACCTGGT CATCGCCGGT TTCACCAAAC CGCATGCCGA CGAGGAGCGG AAACTGGAGG AAGAGATGAA GGCGGCCGAA GTGCTGAAGA TCTAG
|
Protein sequence | MNIGMGGHHP GGGQGGKTGF TALFIRRPIF ALVVNTLIVV AGLAAWNGVE IRELPQVDQP VVSVTTEFDG ASPETIDREV TSVVEGAVSR VQGIKDISST SSFGRSRVTL EFSDTTDIGQ AANDVRDALG RITGQLPDDA DEPRIVKADS DSQPIMRLAL TSDTMSMDDM TLLVENEISD RLAAVEGVAD VTVYGDQEKI FRIDVNQAKL AGRGVTVANL REALANASYD VPAGSLTSAN QDISVRATAD LQTPEQFENL MLGNNVRLRD VATVTLGPDT GTSALRSNGR EGIGLGIIRQ AQSNTVDISQ GVRSVVNAIS SDILPPGTEL KVTSDDAVFI NGAIHEVEIA LFVAVFIVTL VIYLFLLDWR ATLIPTITMP IALIGTVAAI YLAGFSINIL TLLAIVLATG LVVDDAIVVL ENIVRRRAEG LGPRAAAVHG TLEVFFAVLA TTATLAAVFV PLSFLPGQTG GLFREFGFVL AFSILLSSFI SLTLCPMLAS RMLTKERQEH QGVMQRFGQR ASAFYRVTLG ACLNAPLIVF AVAAFFTAAG ALGFLTLKSE LTPNEDRSQV MLRINAPQGV SLEYTQAQIR RIEEGLQPLL KSGEISNVFS ISGQGGSANS GFMVLTLAQW EERDRTQSQI VADINRMTAK IPSLRAFTIQ ANSLGIRGAG SGLQVALVGN DYTKLGDAAA KLLRAMEDSG RFENVRLNYE ANQAQLSVTI DRERTSDLGV DIGGLSWALQ AMLDGSSVVD IFVEGEAYPV KLLSSTEPLN DPTDLQNIFI KAGDGRIVPM SSIATIEEKA VAPQLSRESQ LRAVSLSAGL KSDLALGEAL SMVEEMAEPI LPPGSRIMPL AEAATLDENA NGLFVTFGFA IVIIFLVLAA QFESFVSGLI IMSTVPLGLA CAIFAMILTG NTLNIYSQIG LVMLVGIMAK NGILIVEFAN QLRDRGQDVR SAIENAANIR LRPVMMTMIA TVVGAVPLVL ASGAGAEARI ALGWVLVGGL GLAVIVTLYL TPVAYLVIAG FTKPHADEER KLEEEMKAAE VLKI
|
| |