| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_1998 |
|---|
| Symbol | |
|---|
| ID | 5322857 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009636 |
|---|
| Strand | + |
|---|
| Start bp | 2050857 |
|---|
| End bp | 2051666 |
|---|
| Gene Length | 810 bp |
|---|
| Protein Length | 269 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640790936 |
|---|
| Product | putative transmembrane anti-sigma factor |
|---|
| Protein accession | YP_001327667 |
|---|
| Protein GI | 150397200 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG5662] Predicted transmembrane transcriptional regulator (anti-sigma factor) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.706225 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGACG AATTCGAAAC CGTCTCCGAC GCCGAACTGC ACGCCTTTGT GGATGACCTT
TTGAGCCAAT CGGAACGCGC GCGTGTCGAA TCCTGGCTGG AGAAGCATCC GGAAAAAGCC
GACGAGGTGC ACCGATGGCA GGCCCAGGCA GCGGCATTGA AGCAGTATTT CGCCCCTTAC
GCCCGCAGTG ACGAAAATGA TCGTGCGCTG ATATCGGCTC GCCGGACAGC CGAACGTACC
GGTTCTCGCT CGTCGGCGTT CAGGCTGCGG CGCCTTGCCG CCGTGTTTCT GATTTTCGCC
GCTGGCGCGG CCGCTGGCGT TTACGCGTCC GATCTTTTCG CCCCTGACTC CCGATTGGCC
GCCGCAGCCT CCGAGGCACT CCCCCGGCAG GCGGAATCGG CATTCCTGAT CTATACCAGC
GAAGTCCGCC ACCCCGTGGA GGTCGGCGCC GGTGAGCGGG ATCACCTCGC CACATGGCTC
GGCAAGCGGC TCGACTACGC CCTAAGAATC CCCGATCTGT CCCCGCTCGG CTTTTCGCTC
GTCGGCGGGC GGCTCATTCC CGTCAATGGC AAGGCAGGCG CGATGCTGAT GTATGAAGAC
GGGACCGGCG GGCGGCTGAC GGTGCTTCTC GGCCGGAACA CCGAGAACCG CGAAACGAGC
TTCCGGATCG CCAGCCGTGG CGATGTCGAG ACCTTTTACT GGATCGACGG CGAGATCGGT
TATGCCGTCA CGGGCGAAGT GCCGCGCGAC CTGCTGCAGA AGGTTGCCGA CGAATGCTAT
CGTCAGTTCG AGAACTCGGA GCGCTCCTGA
|
|---|
| Protein sequence | MTDEFETVSD AELHAFVDDL LSQSERARVE SWLEKHPEKA DEVHRWQAQA AALKQYFAPY
ARSDENDRAL ISARRTAERT GSRSSAFRLR RLAAVFLIFA AGAAAGVYAS DLFAPDSRLA
AAASEALPRQ AESAFLIYTS EVRHPVEVGA GERDHLATWL GKRLDYALRI PDLSPLGFSL
VGGRLIPVNG KAGAMLMYED GTGGRLTVLL GRNTENRETS FRIASRGDVE TFYWIDGEIG
YAVTGEVPRD LLQKVADECY RQFENSERS
|
|---|
| |