| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_1981 |
|---|
| Symbol | |
|---|
| ID | 5322840 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009636 |
|---|
| Strand | - |
|---|
| Start bp | 2031739 |
|---|
| End bp | 2033754 |
|---|
| Gene Length | 2016 bp |
|---|
| Protein Length | 671 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640790919 |
|---|
| Product | acyltransferase 3 |
|---|
| Protein accession | YP_001327650 |
|---|
| Protein GI | 150397183 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1835] Predicted acyltransferases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.158164 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAGTACC GAAGGGATAT CGACGGGCTG CGAGCGATCG CGGTCCTACC GGTCGTTCTT
TATCATGCGG GCATTCCGGG CTTTTCCGGT GGGTTCGTGG GCGTCGATAT CTTCTTCGTG
ATATCGGGCT TCTTGATCAC GGGAATACTC CATAAGGAGC TCGCCGAAGG GCGCTTTTCG
CTTGTCAGGT TCTACGAGCG GCGTGCCCGC CGGATATTGC CGGCGCTTTT CGTCGTCGTG
GCGACGTGTC TGGTCGCGGG TGTGCTTCTG CTTCTTCCGG ACATGCTGGT CGGACTTGCG
CGCTCGGCAC TGGCCACAAT GTTGTTCGCA TCGAATATCT GGTTCTGGTT CTCCACGTCC
GATTATTTCG CTCCGAGTGC GGATTTGGAG CCCCTGCTGC ATACCTGGTC GCTGGCGGTC
GAAGAGCAGT TCTACATCGT CTTGCCACTC CTCCTTTGGT GGCTCCATGG AAAGCCGCGC
AGAACAGTCC TCGGGGCGCT TGCCGGCCTA TGCATCCTGT CCTTCGTGCT TTCCGCCTGG
GCCACTGGAC CCTATCCGCA GGAAAGTTTC TATTTCGCGC CAACGCGGGC ATGGGAACTG
GGACTCGGCG TCCTGTTGGC GCTCGGCGCG TTTCCGGCCT GCCGAAACGC GCGCCTGGTC
GAGGCGGTTG CGTTGTCCGG TATCGCAGCG ATCTTCATCT CCGTGGTTTT CTATAGTGCT
GCGACGTCAT TTCCGGGCCT CGCCGCCGCG CTGCCATGTT TCGGTGCGCT GGCGTTGCTT
TGGTCGGGTG AACAACGGCG TACAATTGTG GCGCGCTTGC TGTCCGGCCC TGTGCCGGTG
GCTATCGGTC TCGCCTCCTA TTCCCTCTAT CTCTGGCATT GGCCGATCAT CGTTTATTTC
CGTCTGACGC TCGGTACGCT GGATCTGCCG CATGCGCAGG CACTCATCGC CATAGGCCTT
TCCTTCGTAT GCGCCTTCGC AAGCCTCTAT TTCGTCGAGA GGCCTTTCCG CCGCGGGCCG
CCGGCCGGAT TTTCGCCGCG CCTCATCGTT GCGTCAGGGC TTGCCGGCGC TGTTACCCTC
TCGCTCGTTT CGGCGGCCGT AAACATAGGT GAGGGGCTCC CCGAACGTCT TCCTCAGGAT
GTTCGGCTCG CCTATGCCGG CAGCCGCGAC GTCGACACCC GCCGTGGCCG GTGTGAAGGC
AGGCTTCCAA GTGAAGGTCT GTGCCGCATC GAAGGCGAAG TAAGTTCGCC CGCCGATCTG
AGGAACGATG TGCTTCTGTG GGGCGACTCC CATGCAGGGG CGCTCATGTC GGGCCTTGAT
TTTGTGATGG ACGATCGGAA ACTCGGCGGC GCGGTGGCCT TCAGAGGCGC ATGCCCGCCG
ATCCTCGGTG TACAGAGGGT AGACCAGAGA CACAGCCGTG ATTGCGTCGC CTTCAACGAG
GCTATCATGA CGATGCTGGA GAAAACCGAT GATTTCCCGG TGGTGGTCCT GAGCGCACGT
TGGCCACTGG CGGCGAACGG CAAACGCTAT CCCGGCGAAA CGGGACGTCC TGCAGTCCTC
GACCGTGTGG ACTTCAAGGA GGCGAGCCAC AGCACCGCCG GAAATTATGA AATCTTCAAG
AGCGAGTTTT TGAAGACGGT TCGAGCGATC CGCGATACGG GGCGGCGCGT CGTCATAGTG
GACGGCATAC CGGAAATCGG CTGGTCTGTT CCGCACGCAC TCGGGCTTCA CCGCCTGATC
GACGCCGAAC TGCCGCCTCC ACCCACGCGG CAGGCGGTAG AGGCACGCAG CGCAAAGGCG
AATTCGGTCC TGGCCATTGC CGATGAGGAT CCGGGCGTAC AGCGCGTCAG CGCCGTGCCG
CTTCTGTGCA ACCCCATCTG CGCTGTCGAG AAGGACGGCA TCCCCTTGTA TTCCGACGAT
GACCACCTTA GCGTCTACGG TGCGATGACT CTCGTGCCGA GGATGTTCAA GGACCTGATG
CCAAGCGAAA CCGATCGCCG GCTCGGGCCC GGCTAG
|
|---|
| Protein sequence | MEYRRDIDGL RAIAVLPVVL YHAGIPGFSG GFVGVDIFFV ISGFLITGIL HKELAEGRFS
LVRFYERRAR RILPALFVVV ATCLVAGVLL LLPDMLVGLA RSALATMLFA SNIWFWFSTS
DYFAPSADLE PLLHTWSLAV EEQFYIVLPL LLWWLHGKPR RTVLGALAGL CILSFVLSAW
ATGPYPQESF YFAPTRAWEL GLGVLLALGA FPACRNARLV EAVALSGIAA IFISVVFYSA
ATSFPGLAAA LPCFGALALL WSGEQRRTIV ARLLSGPVPV AIGLASYSLY LWHWPIIVYF
RLTLGTLDLP HAQALIAIGL SFVCAFASLY FVERPFRRGP PAGFSPRLIV ASGLAGAVTL
SLVSAAVNIG EGLPERLPQD VRLAYAGSRD VDTRRGRCEG RLPSEGLCRI EGEVSSPADL
RNDVLLWGDS HAGALMSGLD FVMDDRKLGG AVAFRGACPP ILGVQRVDQR HSRDCVAFNE
AIMTMLEKTD DFPVVVLSAR WPLAANGKRY PGETGRPAVL DRVDFKEASH STAGNYEIFK
SEFLKTVRAI RDTGRRVVIV DGIPEIGWSV PHALGLHRLI DAELPPPPTR QAVEARSAKA
NSVLAIADED PGVQRVSAVP LLCNPICAVE KDGIPLYSDD DHLSVYGAMT LVPRMFKDLM
PSETDRRLGP G
|
|---|
| |