Gene Smed_1795 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_1795 
Symbol 
ID5322653 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009636 
Strand
Start bp1877988 
End bp1878812 
Gene Length825 bp 
Protein Length274 aa 
Translation table11 
GC content56% 
IMG OID640790733 
Productresponse regulator receiver protein 
Protein accessionYP_001327465 
Protein GI150396998 
COG category[T] Signal transduction mechanisms 
COG ID[COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00918371 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value0.000651153 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGTCATTCT TCGGCGTTTC CGGAATGTAC TATTCCGGCG AATCCCTTGG CGAGCACCGG 
ATCGTGCTTG CCGAGGACTC CCATCTCTTT GCCTCAATGG TCTCAAAGCG GTTGAAGGAG
CTTTTCGACA TCGACGTCAT CGTCTGTCGC GACTATGAGG ACCTGCTGTT CGCGGTCGAA
AACGCTTCTT TCGCGCCGTC TCTTGCCATT TCCAATATCA ATCTCCCTGG CGCGGAGAAC
GGGGAGGCGC TCACCTATCT GATCGATATG AGCGTACCGA CGGTCGTCTT CACCGGCTCG
TTCCAGGAGA GCACGCGCGA GGCCATTCTC GCGAAGGATA TTGTAGACTA CGTGATTAAG
GACAGCGTCT TTGCCGTCGA CATGCTGGCG GAATCCGTCT GCCGATTCCT GACCAATCAG
CAGCACCACG TTTTGATCGT CGACGATAGC CCAACCGCAC GAGCCGTTCT GACGACGCAG
TTGAAGCGCC ACAACTTCCG CACGAGCACG GCGGAAAGCG GATTCGCCGC GCTGGAAATC
CTGAAGAACA ATTCGGACAT TGCCCTCGTC ATTACCGACT ACAATATGCC GGATATCGAT
GGATTCGAGC TTACGCGTCG GATCCGAGCA GCGCACGGCC CACATCAGGT ACGCATCATC
GGCGTGTCGT CGTCGATGGA TCGGCTGCTC TCTGCGCGCT TCCTCAAAGC CGGCGGCAAC
GATTTTGTCG TCCGGCCCTT CGTAAACGAG GAATTCTACT GCCGCGTCAA CCAGAACCTC
GATACGCTGA CCAAGATAAA AACACTGAAC GCGAAGGCGG GATGA
 
Protein sequence
MSFFGVSGMY YSGESLGEHR IVLAEDSHLF ASMVSKRLKE LFDIDVIVCR DYEDLLFAVE 
NASFAPSLAI SNINLPGAEN GEALTYLIDM SVPTVVFTGS FQESTREAIL AKDIVDYVIK
DSVFAVDMLA ESVCRFLTNQ QHHVLIVDDS PTARAVLTTQ LKRHNFRTST AESGFAALEI
LKNNSDIALV ITDYNMPDID GFELTRRIRA AHGPHQVRII GVSSSMDRLL SARFLKAGGN
DFVVRPFVNE EFYCRVNQNL DTLTKIKTLN AKAG