| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_1749 |
|---|
| Symbol | |
|---|
| ID | 5322607 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009636 |
|---|
| Strand | - |
|---|
| Start bp | 1828694 |
|---|
| End bp | 1830493 |
|---|
| Gene Length | 1800 bp |
|---|
| Protein Length | 599 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 640790687 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_001327419 |
|---|
| Protein GI | 150396952 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1123] ATPase components of various ABC-type transport systems, contain duplicated ATPase |
|---|
| TIGRFAM ID | [TIGR02323] phosphonate C-P lyase system protein PhnK |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.84058 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.153665 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACATTGC CAAGGCTTTG CCCGATGACT CTCCCTCTGC TTTCCGTGAA CGACCTGAGC
GTCCAGGTGG CCACGCCGAC CGGGCCGAAG GTCGTCGTGG AGCGGCTGTC CTTCGATCTG
CTTCCAGGCA AGACGCTTTG CCTTGCAGGT GAGAGCGGAT CTGGAAAATC GATGACGGCC
CTGTCGCTGA TGCAACTGCT GCCGAAGCCG ACGGCGCGAA TCGCGGACGG CTCGGCCATT
CTCGATGGTG ACGACATACT CGCTCTTCCC GAAGCACGCA TGCGGCAGGT TCGCGGGCGC
AAGATCGGGA TGATCTTTCA GGAGCCCATG ACCTCGCTCA ACCCCGTGAT GACCGTCGGT
GCGCAACTGG TCGGAGCGAT CACCGCCCAC GGCAGCCGAG GCCGGCGCGC TTCGCATGCG
CGCGCCGTCG AACTCCTGGA CCAGGTCCAG ATTCCGGAAC CGGAGCGCCG GCTCGGCCAG
TATCCGCACG AGCTTTCCGG TGGCTTGCGT CAGCGTATCG TCATCGCGAT GGCGCTCGCG
CAGAACCCGC GCATTCTGAT CGCGGATGAA CCGACGACTG CGCTCGACGT AACGGTTCAG
GCCCAGATCC TGGCGCTTAT CCGCAAGCTG CAGGCCGATC ACGGAATTTC GGTGATCATG
ATCACCCATG ACATGGGCGT GGTCGCGGAG ATGGCCGACG AGGTGCTGGT GATGAAGCAT
GGCCGAACTG TCGAGCATGC AACCACCAAG GATCTTTTCG CGCGTCCTGA GGATGCGTAT
ACGAAGGAGC TTCTTTCGGC CGTGCCGCGT CTCGGCGAAA TGGCAGGGTC GGAGATACCC
AAGCGCGCTG CGGGAAGGGC GGTCGCCGGA TCTTCGAGCG ACGCCGAGCA GCCGATGCTC
GAGGTCAAAA ACCTGACGGT CCGTTTCGAC ATCAAGGGCG GCATTCTACA GCGCCCGGTC
AAGCGCCTTC ACGCGGTGGA GGGCATCTCA TTCGATGTGC TGAAGGGGGA GACGCTGTCT
CTTGTCGGAG AATCCGGCTG TGGCAAGTCG ACGACCGGAA AGGCTCTGTT GAACCTTTTG
CCATGGGCGG GGGAGATACG CGTCAACGGA CGCTCCACCC GCGGCTTACG GGGGAGCACG
ATGCGGCCCA TCCTTCGAGA CGTCCAGATG ATCTTCCAGG ATCCTTACGC ATCCCTTGAT
CCGCGCATGC GGGTTGGCGA TCTGGTGGCG GAGCCTCTGG CAATCCATGG GCTGGCAACC
GGCAGCGCAT TGCGTGACCG GGTGGAATAT CTCTTAAAGC GGGTTGGATT ATCGCCTGAG
CAGATGAAGC GTTACCCGCA TGAGTTTTCC GGCGGGCAAC GGCAGCGCAT CTGCATTGCT
CGGGCTTTGT CGCTGTCACC GAAGCTCATC GTCGCAGATG AATCCGTTGC GGCACTCGAC
GTGTCGATCC AGGCTCAGGT GCTCGATCTC CTGCAGGACA TCCAGGACGA GACAGGCATC
TCCTACCTGT TCATTTCTCA CGACATGGCG GTCGTCGAGC AGATCAGCCA TCGGGTAGCG
GTCATGTATA TGGGCCGGTT CGTCGAAATG GGGACGCGGC GACAGATATT CGAGAATCCG
CAGCATCCCT ATACGAAGAA ACTGATGGCT GCGGTCCCCG TGGCCGATCC GACGAGACCA
CGTCGGGATT TCGTACCAAA AGCGGAAGAC CTGCCAAGTC CCGTGCGCCC ACTGGACTAT
ACGCCATCCT TCCCGCCGGC ATCGGATCTG GGCGGCGGGC ATCTCGTCTG GAACGTTTGA
|
|---|
| Protein sequence | MTLPRLCPMT LPLLSVNDLS VQVATPTGPK VVVERLSFDL LPGKTLCLAG ESGSGKSMTA
LSLMQLLPKP TARIADGSAI LDGDDILALP EARMRQVRGR KIGMIFQEPM TSLNPVMTVG
AQLVGAITAH GSRGRRASHA RAVELLDQVQ IPEPERRLGQ YPHELSGGLR QRIVIAMALA
QNPRILIADE PTTALDVTVQ AQILALIRKL QADHGISVIM ITHDMGVVAE MADEVLVMKH
GRTVEHATTK DLFARPEDAY TKELLSAVPR LGEMAGSEIP KRAAGRAVAG SSSDAEQPML
EVKNLTVRFD IKGGILQRPV KRLHAVEGIS FDVLKGETLS LVGESGCGKS TTGKALLNLL
PWAGEIRVNG RSTRGLRGST MRPILRDVQM IFQDPYASLD PRMRVGDLVA EPLAIHGLAT
GSALRDRVEY LLKRVGLSPE QMKRYPHEFS GGQRQRICIA RALSLSPKLI VADESVAALD
VSIQAQVLDL LQDIQDETGI SYLFISHDMA VVEQISHRVA VMYMGRFVEM GTRRQIFENP
QHPYTKKLMA AVPVADPTRP RRDFVPKAED LPSPVRPLDY TPSFPPASDL GGGHLVWNV
|
|---|
| |