| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_1727 |
|---|
| Symbol | |
|---|
| ID | 5322585 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009636 |
|---|
| Strand | - |
|---|
| Start bp | 1807843 |
|---|
| End bp | 1808751 |
|---|
| Gene Length | 909 bp |
|---|
| Protein Length | 302 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 640790665 |
|---|
| Product | binding-protein-dependent transport systems inner membrane component |
|---|
| Protein accession | YP_001327397 |
|---|
| Protein GI | 150396930 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1175] ABC-type sugar transport systems, permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.0276286 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 0.845621 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACAGGTC TAACACGTGG TTCGGCGCGG CCGAACCAGT GGCTGCGAAA CCTGAATGCG
AAGATCGCCT CTATCCCGAT GATTCTCACG GCAGTGGTCA TCTTCGTGGG CGGCACGGCC
TGGACGGTCG TCTACTCCTT TACCAATTCA AAGCTTCTGC CGCGGCTTTC CTTCGTCGGT
TTTGACCAGT ATGAGCGGCT GTGGGCGGCC CCGCGCTGGC TGATCTCGAT TCAGAACCTG
GCGGTCTTCG GTTTGCTGTC ACTGATGTTC AGCCTGGTGA TCGGCTTCGT GCTGGCCGCC
CTGATGGACC AGAAGATCCG TTTCGAGAAT ACGTTCCGGA CGATCATGCT CTACCCATTC
GCCCTGTCGT TCATCGTCAC GGGCCTTGTC TGGCAATGGC TGCTCAACCC GCAATACGGT
ATCCAGTCGA TTGTCAGATC TCTCGGATGG ACGAGCTTCG CTTTCGATCC GCTATATAAT
TCGAATATCG TCATTTACGG CATTCTCATC GCGGCGCTTT GGCAGGGCAC CGGCCTCGTC
ATGTGCCTGA TGCTGGCCGG CCTGCGCGGC ATCGACGAGG ATATATGGAA GGCCTCGCGC
GTCGACGGCA TCCCGATGTG GAAGACCTAC GTGCTGATCA TCATCCCGAT GATGCGCGGC
GTCTTCATCA CCACTCTGGT GATCATCGCA AGCGGCATCG TCAAGGTTTA CGACCTGGTC
GTGGCGCAGA CGAGCGGCGG CCCGGGGATC GCATCCGAAG TTCCGGCCAA ATACGTCTAC
GACTACATGT TCCAGGCGCA GAACCTGGGC CAGGGCTTCG CCGCCTCTAC CATGATGCTC
GTGACCGTCG CGATCATCAT CGTGCCGTGG GCCTATCTGG AATTTGGAGG AGGTCGTAAG
CGTGGATAG
|
|---|
| Protein sequence | MTGLTRGSAR PNQWLRNLNA KIASIPMILT AVVIFVGGTA WTVVYSFTNS KLLPRLSFVG
FDQYERLWAA PRWLISIQNL AVFGLLSLMF SLVIGFVLAA LMDQKIRFEN TFRTIMLYPF
ALSFIVTGLV WQWLLNPQYG IQSIVRSLGW TSFAFDPLYN SNIVIYGILI AALWQGTGLV
MCLMLAGLRG IDEDIWKASR VDGIPMWKTY VLIIIPMMRG VFITTLVIIA SGIVKVYDLV
VAQTSGGPGI ASEVPAKYVY DYMFQAQNLG QGFAASTMML VTVAIIIVPW AYLEFGGGRK
RG
|
|---|
| |