| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_1724 |
|---|
| Symbol | |
|---|
| ID | 5322582 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009636 |
|---|
| Strand | - |
|---|
| Start bp | 1803252 |
|---|
| End bp | 1805726 |
|---|
| Gene Length | 2475 bp |
|---|
| Protein Length | 824 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640790662 |
|---|
| Product | Beta-mannosidase |
|---|
| Protein accession | YP_001327394 |
|---|
| Protein GI | 150396927 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG3250] Beta-galactosidase/beta-glucuronidase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.46466 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCTTCCG ACACCCCGAA CCGCGATGCA CTCCGTATCG ATCTTTCCGG CGATTGGCTG
CTCGCCTCCG CCGACAACAG CCATGCGCTG ACGATCGCGC TGCCGGGCGA CGTGCATAGC
GCGCTGCAGC GAGCCGGCAT CATCGCCGAT CCATACCATG GCCGCAACGA GGCCGAGATC
CAATGGGTCG CCCGGAAAGA GTGGGTGCTC GAGCGGACCG TCGTCATCGG TGCGGACGAT
CTGAACGGGG GATGGTATCT CGACTTCGAG AGCATCGATA CCGTCGCTTC GGTCTTCGTC
AACGAACAGC TTGTGCTGAC GGCGGAGAAC TGCTTTCGCC GTTACCGCCC CGATGTCTCG
GATGCGATTG TCGCGGGCGA AAACCGTATT CGCATCATAC TCCATTCGGC AATTGCCGAG
GGTGAACGGC GGCAGGCGGC GCAACCTTTC TACGTGCCCT ATCACGACGG CAATTCGCCG
ATTGCCAACG GGAATATGCT GCGCAAGCCG CAATGTCACT TTGGCTGGGA CTGGAACATC
GCGATCGCGC CGCTCGGTGT CTACGGCTCT CTCGCGCTTT GCCGGTTGGA GACGGCGCGC
ATCGAGCATC TCACGACGCG TCAGCTCTGG CTGGAGGACG GCTCGGTCGA TCTGCAGGTG
ACGGTCCAGC TTTTTGCCCG GGATCCCGGA ATAGTGCCGG TCTATTTCAC GCTCGACGGA
GTGCGCGAGC GATTGGATTG CGCGGTCGGC CCCGGGGAAA CGCGCGTTAC CCATGTCTTC
ACGATAGAGG AGCCGAGGCG CTGGTGGCCG GCGGGCAGCG GTGACCAAGC GTTTTCGACG
CTTAAGGTGG AGGTGCCGGG CGAGACCGTT ACGCGTCAAA TCGGCTTCCG CACCATAAAA
CTCGTCACCG ACAGTGACGA GGCAGGAAGC CGTTTTGCTT TCAGAGTCAA CGGCCGAGAG
GTATTCTGCC GCGGTGCAAA CTGGATACCG GCGGATGCGC TGAGGTCGCG CGTCACCCCG
GAGGCGGTGG AAGACCTCCT CCGCTCGGCA GTCGACGCGA ACATGAACAT GATCCGCGTC
TGGGGCGGTG GCTTCTACGA GCCCGACTGG TTCTATGATC TCTGCGACCG GCTCGGTCTG
CTCGTCTGGC AGGATTTCAT GTTTGCCTGC AATCTGTACC CGTCGACGCC GGATTTTCTC
GAGAATGTTG CGGACGAAGT GGATTATCAG GTCAGGCGGC TTTCGACCCA TCCGTCCATA
GCGCTCTGGT GCGGCGACAA CGAACTGGTC GGTGCGCTCA CCTGGTTCGA GGAGAGCCGA
AAGGACCGGG ATCGCTATCT CGTCTCCTAC GACCGCCTGA ACCGGACGGT CGAGACCGCC
ATGAGGCGGG CCTGCCCGGA AGCGATCTGG TGGCCGTCGA GCCCTTCCGC CGGTTACCTC
GATTTCGGAG ACGCCTGGCA CGCCGACGGC GCCGGCGACA TGCACTACTG GTCCGTCTGG
CACGAGAACA AGTCCTTTGA CAATTACCGC ACGGTCCGGC CACGCTTCTG CTCCGAATTC
GGCTTTCAAT CCTACACGTC GATGCCGGTG ATCCGGCAAT TCGCCGGGGA ACGGGACCTC
AATATCGCTT CGCCGGTCAT GGAGGCACAT CAGAAGAATG CCGGCGGCAA TGAGCGGATC
GCCGGTACGA TGTTCCGCTA TTTCCGTTTC CCAAAGGATT TTCCGAGCTT CGTCTATCTG
AGCCAGATCC AGCAGGGGCT CGCGATCCGG ACCGCAGTCG ATTACTGGCG GTCGCTGAAG
CCCCATTGCA TGGGCACGCT TTACTGGCAG CTCAACGACA CCTGGCCGGT CACCTCCTGG
TCGAGCCTGG ACTTTGGCGG ACAGTGGAAG GCAATGCACT ATATGGCGCG CCGCTTCTTC
CAGCCGGTTG CCGTAGCAGC GATTCCGTCC GCGGAAGGCA GTGAGGTCGC CATATCGATG
GTAAACGACA CGGCCGAGCC GGTCACGGTG GAGCTTCAGG CGTTCCTCGT TTCGCTCGAC
GGCGAACGGC AACCGCTGCT CGCCGTCGCG GGGACCTGCT CGCCCGATCG TGCTGCGACG
CTCGTGGCCA TTGCCGCAAA GGACATCCCG TCCGACATGC TTCTCTTCTG GTCTTTCGAA
GCTTCGAACG GATCGACCAG CGAGGGGCAT TATGTCAACG GCACCTATAA AGCGCTCGAT
CTCGCGCCCT CCGGTCTGAC AGTCGAGGCA GTACCTCGGC CGGATGGTTC CTTCGATGTC
TCGGTGAAGG CGGCCGGGCT TGCCCTGCAC GTCATGATAG AGGCCGATAT CGAGGGGCGC
TATTCGGATA ATGCTTTCGA CCTGACCGCC GGCGAGACGA AATCGATCCG TTTCAGGCCG
AGGGTGCCGG TCGATGCCGG CGCGAGCCCG CGCTTCAGCG CCTACGATCT CGAAACCTGC
CAGGGAAAAG GGTGA
|
|---|
| Protein sequence | MSSDTPNRDA LRIDLSGDWL LASADNSHAL TIALPGDVHS ALQRAGIIAD PYHGRNEAEI
QWVARKEWVL ERTVVIGADD LNGGWYLDFE SIDTVASVFV NEQLVLTAEN CFRRYRPDVS
DAIVAGENRI RIILHSAIAE GERRQAAQPF YVPYHDGNSP IANGNMLRKP QCHFGWDWNI
AIAPLGVYGS LALCRLETAR IEHLTTRQLW LEDGSVDLQV TVQLFARDPG IVPVYFTLDG
VRERLDCAVG PGETRVTHVF TIEEPRRWWP AGSGDQAFST LKVEVPGETV TRQIGFRTIK
LVTDSDEAGS RFAFRVNGRE VFCRGANWIP ADALRSRVTP EAVEDLLRSA VDANMNMIRV
WGGGFYEPDW FYDLCDRLGL LVWQDFMFAC NLYPSTPDFL ENVADEVDYQ VRRLSTHPSI
ALWCGDNELV GALTWFEESR KDRDRYLVSY DRLNRTVETA MRRACPEAIW WPSSPSAGYL
DFGDAWHADG AGDMHYWSVW HENKSFDNYR TVRPRFCSEF GFQSYTSMPV IRQFAGERDL
NIASPVMEAH QKNAGGNERI AGTMFRYFRF PKDFPSFVYL SQIQQGLAIR TAVDYWRSLK
PHCMGTLYWQ LNDTWPVTSW SSLDFGGQWK AMHYMARRFF QPVAVAAIPS AEGSEVAISM
VNDTAEPVTV ELQAFLVSLD GERQPLLAVA GTCSPDRAAT LVAIAAKDIP SDMLLFWSFE
ASNGSTSEGH YVNGTYKALD LAPSGLTVEA VPRPDGSFDV SVKAAGLALH VMIEADIEGR
YSDNAFDLTA GETKSIRFRP RVPVDAGASP RFSAYDLETC QGKG
|
|---|
| |