Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smed_1719 |
Symbol | |
ID | 5322577 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sinorhizobium medicae WSM419 |
Kingdom | Bacteria |
Replicon accession | NC_009636 |
Strand | - |
Start bp | 1798777 |
End bp | 1799883 |
Gene Length | 1107 bp |
Protein Length | 368 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 640790657 |
Product | TRAP dicarboxylate transporter- DctP subunit |
Protein accession | YP_001327389 |
Protein GI | 150396922 |
COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG4663] TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component |
TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.457663 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 31 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGATCGCC GTTCATTCAT CAAAAATGCG AGCATTGGCG GCCTGGGTGC GGCTGCCGCG TCGGCACTGG CTGCGCCAGC CGTTGCGCAG AGCAACCCGA AGGTCACGTG GCGCTTGACC TCGTCCTTCC CGAAGTCGCT GGACACCATC TATGGTGGTG CGGAAGTCCT GTCGAAATAC GTGTCTGAAG CCACTGACGG CAATTTCCAG ATCCAGGCCT TCGCAGCCGG CGAGATCGTA CCCGGTCTTC AGGCTGCAGA TGCCGCGGCT GCCGGCACCG TCGAAGCGTG CCATACGGTC GCCTATTATT ATTGGGGCAA GGATCCGACC TGGGCGCTCG GCGCAGCCGT GCCCTTCGCG CTCAACGCCC GCGGCATGAA CGCCTGGCAC TATCATGGCG GCGGCATCGA CCTTTTCAAT GAGTTTCTCG GCGCCCAGGG GCTCATCGGC TTTCCGGGCG GCAATACCGG CGTCCAGATG GGCGGTTGGT TCCGCAAGGA GATCAAGACC GTCGCCGACA TGAAGGGGCT GAAGATGCGC GTCGGCGGTT TCGCGGGCAA GGTCATGGAA CGTCTCGGCG TCGTGCCGCA GCAGCTCGCC GGCGGCGATA TCTATCCGGC GCTCGAAAAA GGCACGATCG ATGCGGCCGA ATGGGTCGGC CCCTATGACG ACGAAAAGCT CGGCTTCTAC AAGGTCGCGC CCTATTACTA CTATCCCGGC TGGTGGGAAG GCGGTCCGAC CGTGCACGCC ATGTTCAACA AGGCCGCTTA CGAAGGACTC CCGAAGGCCT ATCAGTCGCT CCTGCGGACG GCCTGCCAGG CCACCGACGC AAACATGCTG CAGAAGTACG ACTATCTCAA CCCGGCCGCC ATCAAGCGTC TTGTTGCGGC GGGAGCGAAG TTGAGCCCGT TCAGCCCGGA AATCCTGTCG GCCTGCTTCG ACGAGTCCAA CAAGGTCTAT GCGGAAATGG AATCCTCCAA CCCCGCATTC AAGAAGATCT GGGATTCGAT CAAGGCCTTC CGCGCCGAAT ATTTCCTCAA CGCCCAGATC GCCGAATACA ACTACGATAC CTTCATGATG ATCCAGCAGC GCAACGGCAA GATCTGA
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Protein sequence | MDRRSFIKNA SIGGLGAAAA SALAAPAVAQ SNPKVTWRLT SSFPKSLDTI YGGAEVLSKY VSEATDGNFQ IQAFAAGEIV PGLQAADAAA AGTVEACHTV AYYYWGKDPT WALGAAVPFA LNARGMNAWH YHGGGIDLFN EFLGAQGLIG FPGGNTGVQM GGWFRKEIKT VADMKGLKMR VGGFAGKVME RLGVVPQQLA GGDIYPALEK GTIDAAEWVG PYDDEKLGFY KVAPYYYYPG WWEGGPTVHA MFNKAAYEGL PKAYQSLLRT ACQATDANML QKYDYLNPAA IKRLVAAGAK LSPFSPEILS ACFDESNKVY AEMESSNPAF KKIWDSIKAF RAEYFLNAQI AEYNYDTFMM IQQRNGKI
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