Gene Smed_1683 details

Gene Information

• Locus tag: Smed_1683
• ID: 5322541
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Sinorhizobium medicae WSM419
• Kingdom: Bacteria
• Replicon accession: NC_009636
• Strand: +
• Start bp: 1764394
• End bp: 1767762
• Gene Length: 3369 bp
• Protein Length: 1122 aa
• Translation table: 11
• GC content: 63%
• IMG OID: 640790623
• Product: sterile alpha motif-containing protein
• Protein accession: YP_001327355
• Protein GI: 150396888
• COG category: [R] General function prediction only
• COG ID: [COG3899] Predicted ATPase

Plasmid Coverage information

• Num covering plasmid clones: 2
• Plasmid unclonability p-value: 0.122095
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 22
• Fosmid unclonability p-value: 0.480972
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGCCCGACA TCGGAGACTG GCTCGCCAGC ATCAGGCTTG AGCAGTATCG CCAAACCTTC 
TTGAAGAACG GCATCGATCT CGATGTGGTC GACGAACTCA CCGATGCCGA CCTCAAGGAG 
CTTGGACTGT CCCTTGGTGA CCGCAAGCGT TTTCTCAGGG CGGCGGCGAC CCTGGCTCGG 
CAGTCGCCAC CACCCACCGC GGCACTACGT CCCTCCGTGT CACCGATCCA CAGCGAGGCG 
GAACGGCGAC AGCTGACGGT GATGTTCTGC GATCTCGTTG GATCAACAGC ACTCTCCGCC 
CGCCTCGATC CGGAAGACCT ACGGCAGTCG ATCGTTGCCT ACCGTGCTTG CGCCACCGAG 
ATCGTCGGCC GGTACGACGG TTTCGTTGCC AAGTATATGG GCGACGGCGT TCTCGTATAC 
TTCGGCTATC CGCAGGCTCA CGAGGAAGAT GCCGAGCGGG CCGTGAGGGC CGGCCTCGCG 
GTCGTTGAAG CTGTCGACCG GCTGGATGCG GCGGGCGAAC ACCTGGCTGT TCGGATCGGA 
ATCGCCACTG GTCTGGTCGT GGTGGGTGAC ATCATCGGCA CCGGCGAGGC CGAGGAATGC 
AGCGTCGTAG GTGAAACGCC AAACCTGGCG GCCCGCCTAC AGGAGTTGGC CGGATCCGGC 
ACAGTGGTCA TTGCCGAAGC GACGCGCGCA CTGCTACGGG GCCAGTTCAA GCTTGAAAGC 
ATCGGACTGC GGCCGATCAA AGGTTTTTCC GGGGCGGCTG AGGCGTTTCG GGTGCTCGGC 
GAAGTGCGTG GCGACGACCG CTTCGAGGCC GGTCACGCGA CCGTTCTGCC GTTGGTCGGC 
CGTGACCGGG AACTCGCATT GTTGGTCGAT CGCTGGACTC AGGCCAAGGC CAACAAAGGT 
CAGGTCGTCC TGCTCGAGGG TGAGGCCGGA ATCGGCAAGT CGCGTCTCGC CGTGGCCCTT 
CGCGAGCGTC TCTGTCGAGA ACCACACAGC TTGCTTCGCT ACTTCGCCTC GCCATACTAC 
GTCAACAGCG CGCTTCGTCC GGTGATTGCC CAGCTTGAAC AGGAAGCAGG ATTTGAACGC 
GAGGATTCAT CGGTTGTGAA GCTCGCCAAA CTCCGGGCGC TGATCGCGGA ACAGATGGGT 
GAGGTGAGCG AAGCGCTCCC ATTGTTGGCG GAGCTTCTCG GCATACCAGG CACCGACCGC 
TGTCCAATAT TGGATCTTGC GCCCCAACAG CGTAAAAACC GAACCGTCGA CGTGCTCATC 
GCCCAGCTTG CCAGGCTGGC TGCGAAGCAG CCGGTGCTGC TGGTGCTTGA AGACGCTCAC 
TGGCTGGACG CGAGTAGCCT TGAGCTGTTC GGCTTATTCG TGAACCAGAT CCGACAGCTC 
CCGGTGCTGC TGGTCGTTAC CCATAGGCCC GAGTTCGTCC CGCCTTGGCG TAGTTACCGG 
CACGTGACAA AGGTGGTCCT GAATCGGCTC GAACGGGTGC ACGCTCAATT GCTGGTCGAA 
CGGCTAGCGG GCGGAAAGGC ACTGCCTGCT GGCGTGCTCG ATTACATCCT GGCCAACACC 
GATGGCGTAC CGCTGTACCT TGAGGAGTTG ACCAAAACCA TGCTCGAATC TGGTCTCCTG 
GAAGTGGCCG GCGATCAGTT TGGACTGACT GCACATATGC CGCCGCTGGC GATCCCGGTA 
ACGCTATACG ACTCGCTGAT GGCCCGCCTC GACCGTCTCG GCAAGGCCAA GGTGGTAGCC 
CAGATCGGCG CCTGCATCGG GCGCGAGTTC TCCTACGAGC TGATTGCGGC GTTAGCAGCG 
CTCAATGAGC ATGAGCTGCA GAGAAGGCTT GATCAACTGG TTGCTACTGA GCTGGTTTTT 
CGGCGCGGAA GTCCCCCTGA CGCGATCTAC AGCTTCAAGC ACGCGCTCGT CCGAGATACC 
GCATATCAGT CGCTCCTCAA GAGCCGCCGC CGGGAACTAC ATCGCCGTAT TGCGCAGGTC 
TTCGAAGAAC TCGCCCCACA TGTCGTGTTC GCTCAGCCGG AGCTCCTGGC CCATCATCTG 
ACGGAGGCAG GAGAGCTGCC GCAAGCCGTC GTGTTCTGGC ACCGGGCCGC CGAGCACGCA 
ACCGAGCGGG CGGCGAATGC CGAGGCCGTC GGCCATCTGG CCAAGGCACT CGACCTGCTC 
GCCCAGATGC CCGAGAATCC GGAGCGCTTC GAGCTTGAGC TGACGTTATT GATCACCATG 
GGACGAGTGC TTACCGCCGC AAAGGGCTAT GGCCACCCGG AGGTCGAGCG CATCTACAAC 
CGTGCTCTCA ACCTCGCGGA GCGGATCCAG GAAACGCCAA GGCTGTTCCC GGTGCTCCTC 
GGTCTCACCA TTCATCACGC GGTGCGGTCC GAGCTTTCCG CGGCGCGGGA CCTTGGCGAA 
CGGCTTCTGA GGTTGGCGCA GCAGATATCG GACCCTGTGC TCGTGGTGGA AGCGTCCTAT 
GCTTTGGGCA TTACCTGCTC CTGGCGCGGC GAATTCGCCT CGGCATGGAA GCACTTCGAG 
CACGGGATCA GCCAGTACGA CATCGCCCAG CACCGCGCCC ATCTAGCGCT CTATGGACAG 
GATGGAGGGC CGATCTGCCT GTGCCGTGGT GGCATGGCGC TGTGGTATCT CGGCCACGAT 
CACCGGGCGC TGGAGCTGAT GGACGAGGCG CTCACCATGA CCGCGAGCCT CCGGCATTTG 
TTCAGCCGTG CCTATGTACT GACTTGGGCG GCGATTTTGC ACGTGCATCG ACGCGACATC 
GCCAAGGCGC AAGGGGCGGC GGAGTTGGCC TTGGCTTTCG CGGCCGAACA CGGATTTCCA 
TTCTGGCACA CCCAGGGAGT CTTCCTGAAG GGATGGGCGC TGGCGGAGCA GGGCCTGATC 
GCGGAAGGCA TAGAGCGGTT GCGAGACGGG TTGGCTGGGA TGCAGGCGAT CGGGTCAGGA 
ATGACGGCGC CCTGGGCGAT GGGCTTGCTC GCGGAGGCAC ATGGAAAGGC TGATCGTTTC 
GCCGAGGGTA GCACCTTGAT TGACGAGGCG CTTACCATTG TCACGCGCAC TGGCAACCGC 
TGGTGCGAGG CGGAGCTGCA TCGGCTCAAG GGCGAACTCA TCTCGTCGAG CTCAGAATGC 
GATCCTGCCG AAATCGAGGC GTGCTTCCGC CGTGCGCTCG ACGTCGCCCG CATGCAGGAT 
GCGAAGATGT GGGAACTGCG CTCGGCGGTG AGTTTGGCCC GGCTTTGGCG AGCACAGGGT 
CGTAGAGCGC AGGCCCGCGC GCTGCTCATG CCGCTCCTCG GCTGTCTCTC TAACGGCCAA 
GGGACGCTCG ATCTTCAGGA TGCTCAAGCG GTCCTCGATA GCTGCGGAGG TAGTAAATTG 
AGCACCTGA 

 

Protein sequence

MPDIGDWLAS IRLEQYRQTF LKNGIDLDVV DELTDADLKE LGLSLGDRKR FLRAAATLAR 
QSPPPTAALR PSVSPIHSEA ERRQLTVMFC DLVGSTALSA RLDPEDLRQS IVAYRACATE 
IVGRYDGFVA KYMGDGVLVY FGYPQAHEED AERAVRAGLA VVEAVDRLDA AGEHLAVRIG 
IATGLVVVGD IIGTGEAEEC SVVGETPNLA ARLQELAGSG TVVIAEATRA LLRGQFKLES 
IGLRPIKGFS GAAEAFRVLG EVRGDDRFEA GHATVLPLVG RDRELALLVD RWTQAKANKG 
QVVLLEGEAG IGKSRLAVAL RERLCREPHS LLRYFASPYY VNSALRPVIA QLEQEAGFER 
EDSSVVKLAK LRALIAEQMG EVSEALPLLA ELLGIPGTDR CPILDLAPQQ RKNRTVDVLI 
AQLARLAAKQ PVLLVLEDAH WLDASSLELF GLFVNQIRQL PVLLVVTHRP EFVPPWRSYR 
HVTKVVLNRL ERVHAQLLVE RLAGGKALPA GVLDYILANT DGVPLYLEEL TKTMLESGLL 
EVAGDQFGLT AHMPPLAIPV TLYDSLMARL DRLGKAKVVA QIGACIGREF SYELIAALAA 
LNEHELQRRL DQLVATELVF RRGSPPDAIY SFKHALVRDT AYQSLLKSRR RELHRRIAQV 
FEELAPHVVF AQPELLAHHL TEAGELPQAV VFWHRAAEHA TERAANAEAV GHLAKALDLL 
AQMPENPERF ELELTLLITM GRVLTAAKGY GHPEVERIYN RALNLAERIQ ETPRLFPVLL 
GLTIHHAVRS ELSAARDLGE RLLRLAQQIS DPVLVVEASY ALGITCSWRG EFASAWKHFE 
HGISQYDIAQ HRAHLALYGQ DGGPICLCRG GMALWYLGHD HRALELMDEA LTMTASLRHL 
FSRAYVLTWA AILHVHRRDI AKAQGAAELA LAFAAEHGFP FWHTQGVFLK GWALAEQGLI 
AEGIERLRDG LAGMQAIGSG MTAPWAMGLL AEAHGKADRF AEGSTLIDEA LTIVTRTGNR 
WCEAELHRLK GELISSSSEC DPAEIEACFR RALDVARMQD AKMWELRSAV SLARLWRAQG 
RRAQARALLM PLLGCLSNGQ GTLDLQDAQA VLDSCGGSKL ST