Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smed_1586 |
Symbol | |
ID | 5322444 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sinorhizobium medicae WSM419 |
Kingdom | Bacteria |
Replicon accession | NC_009636 |
Strand | - |
Start bp | 1682346 |
End bp | 1683488 |
Gene Length | 1143 bp |
Protein Length | 380 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 640790530 |
Product | Sel1 domain-containing protein |
Protein accession | YP_001327262 |
Protein GI | 150396795 |
COG category | [R] General function prediction only |
COG ID | [COG0790] FOG: TPR repeat, SEL1 subfamily |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.139807 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 30 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAAGTCAA TTGGCACCAG TTTGATTGTT GCCCTTTCGC TCATGGCTGC AATGCCGATA CGAGCCGGCG CCCAAGATCC CGCGTCCTCT TTTGACGCGA GGGCGGCGCA GGCGGTCCGC GACGACCCGC AAGCACAGTT CGTTCTCGGT TCGATGTACT ACAAGGGCAG CAGCGGGACA CGGCGCGACC ATGCCATGGC AGCATACTGG TACCGCAAGG CCGCTGAACA GGGGCATGTC AAGGCGCAAG TTAATCTGGG CGGCTTGTAT TTCGACGGCG AGGGCGTGGC GCAGGATTAT GCCGAAGCGG CGCGGTGGTT TCGCAAGGCG GCCGAGGATG GCGCCGCCGC TTTGGCCGAG CTCAATCTCG GCGTGATGTA CGAGCACGGA AGAGGTGTCG CGCCGGATCC GGCCGAGGCC GCGCGCTGGT ACGGAAGGGC GGCCGAGCAT GGGGATGCGC AGGCGCAACA CCGACTTGGT CTCATGTACT TCAAAGGCGA AGGAGTGAAA CGGGATCACG TGCAAGCAGC GCGCTGGTAT CGCGCGGCGG CCGCGCAAGG CAACCCTTCC GCCCAGTTCC ATCTCGGAAG CATGTATTTG CAGGGTCAGG GCGTGCCGAA GGAACCGTCA GAAGCGTTTC GTCTGTTCCG GGGCGCGGGC GGGCTCGGGC ATGAAAACGC TCAGTACAAT CTGGGCTTGA TGTATCTGAA TGGCATCGGT GTGCAAAAGG ATCTTGATGA ATCCGTGCGC TGGTTTCGCG CCGCGGCCGA ACAGAAATCG GCGCTTGGTC AGTACAATCT CGCACTGATG TACGCGAACG GCACCGGTGT TGCCAAAAAT TCAGAAGAGG CGGCTCGCTT GACGAGTCTC GCGGCCCATC AGGGATTGGC AATGGCGCAG CACAATCTCG GCATCGCCTA TATCAGCGGT GCGGGCGTGG AAAAGGACTC TGCAGCGGCC GTGCATTGGT TTCAGAAGGC GGCGCAGCAG GGTCATGCCA GGGCTCAGTT CAATCTGGCA ATGATGTATG CACGGGGTGA GGGCGTGGCC AGGAACGATG CGCTCGCGTT CGAGTGGATG CAGAAGGCGG CAAATCAGCT GCCGGAGGCG CGGCAGTACC TCGATCGCAC GCGCAAGGAA TGA
|
Protein sequence | MKSIGTSLIV ALSLMAAMPI RAGAQDPASS FDARAAQAVR DDPQAQFVLG SMYYKGSSGT RRDHAMAAYW YRKAAEQGHV KAQVNLGGLY FDGEGVAQDY AEAARWFRKA AEDGAAALAE LNLGVMYEHG RGVAPDPAEA ARWYGRAAEH GDAQAQHRLG LMYFKGEGVK RDHVQAARWY RAAAAQGNPS AQFHLGSMYL QGQGVPKEPS EAFRLFRGAG GLGHENAQYN LGLMYLNGIG VQKDLDESVR WFRAAAEQKS ALGQYNLALM YANGTGVAKN SEEAARLTSL AAHQGLAMAQ HNLGIAYISG AGVEKDSAAA VHWFQKAAQQ GHARAQFNLA MMYARGEGVA RNDALAFEWM QKAANQLPEA RQYLDRTRKE
|
| |