| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_1560 |
|---|
| Symbol | |
|---|
| ID | 5322418 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009636 |
|---|
| Strand | + |
|---|
| Start bp | 1654170 |
|---|
| End bp | 1654814 |
|---|
| Gene Length | 645 bp |
|---|
| Protein Length | 214 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 640790505 |
|---|
| Product | autoinducer synthesis protein |
|---|
| Protein accession | YP_001327237 |
|---|
| Protein GI | 150396770 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG3916] N-acyl-L-homoserine lactone synthetase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.766209 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 0.485309 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCAGGA TAGTAAACGG AAACGGTCGC AGCCAACATC CCCAGGCCAT CGACGAGATG
TTCCGGCTGC GTAAGCGCGT GTTCCACGAC TTCTTGAAAT GGGACGTAAA AACCGAAGGG
GATTGGGAAA TCGATCACTA CGACAAAGCC AATCCGCTCT ATGTGATGTC GTACTCGCCG
GAAACCGGCA AGATCCGGGG CTCCCTCAGG CTCCTTCCGA CACTCGGACC GAATATGCTG
GATGACACCT TCCCTATCCT TCTCGGGGAC AATCCGGAAA TCCGTAGTGC GTCGGTGTGG
GAGTCGAGCC GCTTCTGCAT CGACCCTGAA ATCTCCCAGG ACCGGGCATC GAATCAGGTC
ACGGTGGCCG CCGCCGAGTT GATGTGCGGC GTCGGCGAAA TGGGCCTTGC CTCGGGCATC
AGCCATATCG TCACCGTCAC CGACGTGTTC CTCGAGCGGA TGTTCCGCCG CATGGGCTGC
CCCGGAGAAC GCATCGCCGA CCCGCACAGG ATCGGCTCCG TCTACGCGGT TGCCATTGCC
TGGGAGGTCA GCAGGACCCT GCTCGATACG ATGAAGGCGG TAGCGGCCAT CGAGGGCACC
GTCCTCGAGC AACCGATGTC GCTCGAAACG GCGCGTGCCG CTTAG
|
|---|
| Protein sequence | MIRIVNGNGR SQHPQAIDEM FRLRKRVFHD FLKWDVKTEG DWEIDHYDKA NPLYVMSYSP
ETGKIRGSLR LLPTLGPNML DDTFPILLGD NPEIRSASVW ESSRFCIDPE ISQDRASNQV
TVAAAELMCG VGEMGLASGI SHIVTVTDVF LERMFRRMGC PGERIADPHR IGSVYAVAIA
WEVSRTLLDT MKAVAAIEGT VLEQPMSLET ARAA
|
|---|
| |