Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smed_1556 |
Symbol | |
ID | 5322414 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sinorhizobium medicae WSM419 |
Kingdom | Bacteria |
Replicon accession | NC_009636 |
Strand | - |
Start bp | 1648319 |
End bp | 1649542 |
Gene Length | 1224 bp |
Protein Length | 407 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 640790501 |
Product | major facilitator transporter |
Protein accession | YP_001327233 |
Protein GI | 150396766 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.897116 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 0.129024 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATTCCCT CCTCTGCTCC CGCGTTCGTA GCGGGGCCCC CGCCGCGCCA TTTCGCACTC CGCATTGCGC TGCTCTTCTC GGCGCCGTTG ATCGTCAATG GTTTCGCCAT GCCGTACTTT CCGGTCTGGC TCAGCAGCCT GTCGCTCAGC GATTTCGAAA TCGGCATAGT GCTTGCGGTT CCCATGTTCG TCCGAGTGAT CACCGCACCC TTGGCGGGCG TTCTTGCCGA CCGTATTGGC GAGCGGTCTA TCGTTCTGAT CTGGTCCGGG GTCCTGTCTT TCGCCGCTGC CATTATTCTT TTCCATGCGC AGCGTTTCTG GCCAGTTCTC GTCATCTACA CGCTGCAATC GGCGGTTTAT TCCCCTTACA TGCCGATCGT CGAGGCCATC GCCTTATCGG GCGTTCGGCG CTGGGGCTTC GACTACGCGC AGATGCGTGT CTGGGGATCG GTCGCCTTTA TCGGGGCGAC GATGCTGGGT GGCTGGCTGA TCGGGATCGT CGGCGGCCAG ATGGTCCTGC CGGCCATGGC CGCGGGTTTC GCGCTGGCCA TTCTGTTGGC CGTAGCGGCG CCGCGTGTCG GGCGGCCGCG CAGGCCGTCG CCGATTACCG CAATCACGGA GCCTCCGCCA CAATCGCTGC GCCAGACGGA TCTGCAACTG CTCCTGGTCG GCGTGACGCT GATCAATAGC AGCCACGCGA TGCTCTTCGC CTTCTCTGCC ATTTACTGGC AACATATCGG CTACAGCGGC ACGCAGATCG GCGTTCTCTG GAGTGCCGGC GTCGCGGCGG AAGTTCTGAT GTTCTTCTTC GCCAAGGCGA TCGTCCGCCG GTTCAGCGTC TGGACGATGA TCTTCTCCGG CTGCCTGCTT GCTGTCATAC GCTGGCTGAT CTTCCCGATG GATCTCGGTT TTTCGGGCTA TTTCGTTCTG CAATGCTTCC ACGCCTTCAC TTACGCGATC ATGCATACGG GCATGCAGCA CAAGCTGGTC GAGCGCGTCG CGGAGGAGCA GGAGGCATCG GCGCAGGGGC TGTATTTTTT CTACACCGGC GTCTTCACGG CTATCTTCAC CTTTCTGTCC GGCTATTTCT ACGCCTGGTT CGGTGTCGAC GGCTTCTACT CCATGTCGGT GGTTGCGCTG TCGGGGTGCC TCTTCACTTT TCTGGGCTGG TTTCTTCAAC CCCAGAGGCT GGCTTCCGCC GGAAAAACGA GCGAGGCCTC GTAG
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Protein sequence | MIPSSAPAFV AGPPPRHFAL RIALLFSAPL IVNGFAMPYF PVWLSSLSLS DFEIGIVLAV PMFVRVITAP LAGVLADRIG ERSIVLIWSG VLSFAAAIIL FHAQRFWPVL VIYTLQSAVY SPYMPIVEAI ALSGVRRWGF DYAQMRVWGS VAFIGATMLG GWLIGIVGGQ MVLPAMAAGF ALAILLAVAA PRVGRPRRPS PITAITEPPP QSLRQTDLQL LLVGVTLINS SHAMLFAFSA IYWQHIGYSG TQIGVLWSAG VAAEVLMFFF AKAIVRRFSV WTMIFSGCLL AVIRWLIFPM DLGFSGYFVL QCFHAFTYAI MHTGMQHKLV ERVAEEQEAS AQGLYFFYTG VFTAIFTFLS GYFYAWFGVD GFYSMSVVAL SGCLFTFLGW FLQPQRLASA GKTSEAS
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