Gene Smed_1556 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_1556 
Symbol 
ID5322414 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009636 
Strand
Start bp1648319 
End bp1649542 
Gene Length1224 bp 
Protein Length407 aa 
Translation table11 
GC content61% 
IMG OID640790501 
Productmajor facilitator transporter 
Protein accessionYP_001327233 
Protein GI150396766 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2814] Arabinose efflux permease 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.897116 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value0.129024 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATTCCCT CCTCTGCTCC CGCGTTCGTA GCGGGGCCCC CGCCGCGCCA TTTCGCACTC 
CGCATTGCGC TGCTCTTCTC GGCGCCGTTG ATCGTCAATG GTTTCGCCAT GCCGTACTTT
CCGGTCTGGC TCAGCAGCCT GTCGCTCAGC GATTTCGAAA TCGGCATAGT GCTTGCGGTT
CCCATGTTCG TCCGAGTGAT CACCGCACCC TTGGCGGGCG TTCTTGCCGA CCGTATTGGC
GAGCGGTCTA TCGTTCTGAT CTGGTCCGGG GTCCTGTCTT TCGCCGCTGC CATTATTCTT
TTCCATGCGC AGCGTTTCTG GCCAGTTCTC GTCATCTACA CGCTGCAATC GGCGGTTTAT
TCCCCTTACA TGCCGATCGT CGAGGCCATC GCCTTATCGG GCGTTCGGCG CTGGGGCTTC
GACTACGCGC AGATGCGTGT CTGGGGATCG GTCGCCTTTA TCGGGGCGAC GATGCTGGGT
GGCTGGCTGA TCGGGATCGT CGGCGGCCAG ATGGTCCTGC CGGCCATGGC CGCGGGTTTC
GCGCTGGCCA TTCTGTTGGC CGTAGCGGCG CCGCGTGTCG GGCGGCCGCG CAGGCCGTCG
CCGATTACCG CAATCACGGA GCCTCCGCCA CAATCGCTGC GCCAGACGGA TCTGCAACTG
CTCCTGGTCG GCGTGACGCT GATCAATAGC AGCCACGCGA TGCTCTTCGC CTTCTCTGCC
ATTTACTGGC AACATATCGG CTACAGCGGC ACGCAGATCG GCGTTCTCTG GAGTGCCGGC
GTCGCGGCGG AAGTTCTGAT GTTCTTCTTC GCCAAGGCGA TCGTCCGCCG GTTCAGCGTC
TGGACGATGA TCTTCTCCGG CTGCCTGCTT GCTGTCATAC GCTGGCTGAT CTTCCCGATG
GATCTCGGTT TTTCGGGCTA TTTCGTTCTG CAATGCTTCC ACGCCTTCAC TTACGCGATC
ATGCATACGG GCATGCAGCA CAAGCTGGTC GAGCGCGTCG CGGAGGAGCA GGAGGCATCG
GCGCAGGGGC TGTATTTTTT CTACACCGGC GTCTTCACGG CTATCTTCAC CTTTCTGTCC
GGCTATTTCT ACGCCTGGTT CGGTGTCGAC GGCTTCTACT CCATGTCGGT GGTTGCGCTG
TCGGGGTGCC TCTTCACTTT TCTGGGCTGG TTTCTTCAAC CCCAGAGGCT GGCTTCCGCC
GGAAAAACGA GCGAGGCCTC GTAG
 
Protein sequence
MIPSSAPAFV AGPPPRHFAL RIALLFSAPL IVNGFAMPYF PVWLSSLSLS DFEIGIVLAV 
PMFVRVITAP LAGVLADRIG ERSIVLIWSG VLSFAAAIIL FHAQRFWPVL VIYTLQSAVY
SPYMPIVEAI ALSGVRRWGF DYAQMRVWGS VAFIGATMLG GWLIGIVGGQ MVLPAMAAGF
ALAILLAVAA PRVGRPRRPS PITAITEPPP QSLRQTDLQL LLVGVTLINS SHAMLFAFSA
IYWQHIGYSG TQIGVLWSAG VAAEVLMFFF AKAIVRRFSV WTMIFSGCLL AVIRWLIFPM
DLGFSGYFVL QCFHAFTYAI MHTGMQHKLV ERVAEEQEAS AQGLYFFYTG VFTAIFTFLS
GYFYAWFGVD GFYSMSVVAL SGCLFTFLGW FLQPQRLASA GKTSEAS