Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smed_1552 |
Symbol | |
ID | 5322410 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sinorhizobium medicae WSM419 |
Kingdom | Bacteria |
Replicon accession | NC_009636 |
Strand | - |
Start bp | 1643779 |
End bp | 1645155 |
Gene Length | 1377 bp |
Protein Length | 458 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 640790497 |
Product | hypothetical protein |
Protein accession | YP_001327229 |
Protein GI | 150396762 |
COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG1463] ABC-type transport system involved in resistance to organic solvents, periplasmic component |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.394461 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 0.189115 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGCCGATGG AAACTAAAGC GAATTATGCC ATTGTCGGCT TCTTCACCGT CCTGGTCATC GCGGCCGCCT TCGGTTTCGT CTACTGGATG TCGCAATATG GCCGCACCGG CCAAATGGTC CAGCTCGTCG TCAATATTCC CGGATCGGCA AATGGCCTGT CGGTAGGCTC GCCGGTTCGC TTCAATGGCA TCAATGTCGG CAGCGTCCGT AATCTCGCGA TCGATGCCAA CGATCCGCGC TATTCGATCG CAATAACCGA AGTCTCAGCC GATGCGCCTG TGATGAAATC TACGACCGCC ACTCTCGAAG TTCAGGGCCT TACGGGAGCG GCCTATATCG AGCTCAGCGG TGGGCGCAAA GGGGACGAGA ATATTCTGAA GACCGCTTTG GAAAGAGGCA CCCAGGCGCA TATACTTGCC GATCAGTCGA GCGTCACCAG CCTGCTGGCG ACTGCGGACC AGATCCTCGA CCGGGCGAAT TCGGCGATCA CGGATATTCA AAGCTTCGTC ACCGACGTCC GTGGGCCGCT GACCTCAACC ATCGGCAATG CCGAACGATT CTCCAAGGCG CTTGCGGACA ATTCCGATGC CATCGACCAG TTCCTGGAGA GCGTCGAACA ACTGTCTGGC TCCGTCAACG CAGCATCCAA GAAACTCGAC GATACGCTTG CCGGTGCCGA CAGGCTGATC AAAGCGGTAG ACCCGAAGAA GATCGAGAAC ATCGTCGGCA ATGCCGAGCA GGTGAGTAAC AATCTAAAGA ATGCTTCCGG CGAGGTGACC GAAACGGTTG CCAGCTTCCA GCGTACGTTG GAAACCTACA ATCAGTTCGG CAAGAATGCC CAGCAGACGT TGGAACGCGT CGATGCACTG GTTGCCGCGG TGGATTCGCA GAAGGTCGGC TTGGTCGTCA ACGACATCAC GGCTGCGAGC GCGGACGCCC GCAAGGTCGC CGCGCAAGTC TCGGATTTTG CTGAAAAGAT TTCCGCCCGG CAGGGGGATA TCGATCAGAC GATCACCGAT TTCACGCAAA TGTCGAACAA GCTGAATGCA GCTTCGGGCC GAGTGGACAG CATACTCGTG AAGATCGACG GATTTCTCGG AGACGCTGAC GCTCCGTCGC TTTCGGCGCA GGCACGCGAA ACGCTCGAGT CGTTCCGGCG GGTGGCGGAA AACCTGAACG CACAGCTCGG TCCGATCGCC GAAAATCTCA AGCGATTCTC CAATTCCGGA CTTCGAGATG TGGAGGCCCT GATCGGCGAT ACACGCCGCA CGGTGCAAGG TCTGCAAAAT ACGATTTCCG AATTCGATAA AAATCCGCAA CGGCTTTTGT TCGGCGGCGA AACGGTTAAG CAATATGATG GCCGCACGCG TCGGTGA
|
Protein sequence | MPMETKANYA IVGFFTVLVI AAAFGFVYWM SQYGRTGQMV QLVVNIPGSA NGLSVGSPVR FNGINVGSVR NLAIDANDPR YSIAITEVSA DAPVMKSTTA TLEVQGLTGA AYIELSGGRK GDENILKTAL ERGTQAHILA DQSSVTSLLA TADQILDRAN SAITDIQSFV TDVRGPLTST IGNAERFSKA LADNSDAIDQ FLESVEQLSG SVNAASKKLD DTLAGADRLI KAVDPKKIEN IVGNAEQVSN NLKNASGEVT ETVASFQRTL ETYNQFGKNA QQTLERVDAL VAAVDSQKVG LVVNDITAAS ADARKVAAQV SDFAEKISAR QGDIDQTITD FTQMSNKLNA ASGRVDSILV KIDGFLGDAD APSLSAQARE TLESFRRVAE NLNAQLGPIA ENLKRFSNSG LRDVEALIGD TRRTVQGLQN TISEFDKNPQ RLLFGGETVK QYDGRTRR
|
| |