| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_1442 |
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| Symbol | |
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| ID | 5322294 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009636 |
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| Strand | - |
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| Start bp | 1522726 |
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| End bp | 1523736 |
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| Gene Length | 1011 bp |
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| Protein Length | 336 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 640790385 |
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| Product | TRAP dicarboxylate transporter, DctP subunit |
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| Protein accession | YP_001327123 |
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| Protein GI | 150396656 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1638] TRAP-type C4-dicarboxylate transport system, periplasmic component |
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| TIGRFAM ID | [TIGR00787] tripartite ATP-independent periplasmic transporter solute receptor, DctP family |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.201981 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.0000183061 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAGATTA CCCGTAGAAC GATGCTGCTC GGCACCGGGG CAGTGGCCAT CGGGGCGTCG
ATCCGCACAA AGGCTCATGC GGCGGACTTC ACCTACAAGC TGGCAAACAA CCTGCCGGTT
ACCCACCCGC TCAACATCCG CCTGAAGGAA GCGGCCGACA AGATTCTGGA GGAGACTGGA
GGTCGGCTGA AGATCAACAT CTTCCCGAGC AGCCAGCTCG GCAACGACAC CGAAACCCTT
TCGCAGCTTC GCAACGGCGC AACCGAGTTC TTCTCGCTCT CGCCGCTGAT CCTGTCGACC
CTTGTTCCCA ACGCCGCCAT CAGCGGTATC GGCTTCGCCT TCCCCGACTA CGACACCGTC
TGGAAGGCCA TGGACGGAGA GCTCGGTGCC TATGCACGCG GCGAGATCGA GAGAAAGGGT
CTCGTGCCCA TGGAAAAGAT CTGGGACAAC GGCTTTCGGC AGATCACCAG CTCGAATAAG
CCGATCAACA CGCCGGAGGA TCTCAAAGGA TTCAAGATCC GTGTGCCGCC GAGCCCGCTC
TGGCAATCCA TGTTCACAGC CTTCGGCGCC GCACCGACCA CGATCAATTT TGCCGAGGTC
TACACGGCGC TCAGCACCGG CACGGTGGAC GGCCAGGAAA ATCCGTTGGC AATCGCATCC
ACCGCCAAGC TTTATGAGGT TCAGAAGCAT TGCGCCATGA CCAACCATAT GTGGGATGGT
TTCTGGATGC TGGCGAACAA GCAGGCCTGG GAGAGACTGC CTGAAGACAT CAGGGAGATT
GCAGCCAGAA ACCTGAACGA ATCGGCCACG GCCCAGCGGA CCGATACCGC CAAGGTGAAC
GACACAGTCC GCGAACAACT GACGCAGAGT GGCATGACTT TCACCGATCC GGATAAGGCT
GCGTTCCGCA AAACGCTGAG GTCGGCGGGT TTCTATGCCG AATGGAAGGG CAAGTTCGGT
GACGAGGCGT GGGCCATCCT GGAAAAGGCG GTAGGGACCA GCCTGGGCTG A
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| Protein sequence | MKITRRTMLL GTGAVAIGAS IRTKAHAADF TYKLANNLPV THPLNIRLKE AADKILEETG
GRLKINIFPS SQLGNDTETL SQLRNGATEF FSLSPLILST LVPNAAISGI GFAFPDYDTV
WKAMDGELGA YARGEIERKG LVPMEKIWDN GFRQITSSNK PINTPEDLKG FKIRVPPSPL
WQSMFTAFGA APTTINFAEV YTALSTGTVD GQENPLAIAS TAKLYEVQKH CAMTNHMWDG
FWMLANKQAW ERLPEDIREI AARNLNESAT AQRTDTAKVN DTVREQLTQS GMTFTDPDKA
AFRKTLRSAG FYAEWKGKFG DEAWAILEKA VGTSLG
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