Gene Smed_1374 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_1374 
Symbol 
ID5322224 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009636 
Strand
Start bp1453934 
End bp1455388 
Gene Length1455 bp 
Protein Length484 aa 
Translation table11 
GC content58% 
IMG OID640790315 
Productcation transporter 
Protein accessionYP_001327055 
Protein GI150396588 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG0168] Trk-type K+ transport systems, membrane components 
TIGRFAM ID[TIGR00933] potassium uptake protein, TrkH family 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones35 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGAACGCGA ATCTGATCCG GCACGCTGTC CATCTCGCTG CGATTCTGGG GCTTTATCTC 
TCCGGCGCGA TGCTTATTCC GGCCTTCGTC GATCTTTATT ACGGCCATCC GGACTGGCAG
GTTTTTGCCG TGACGGCTTT CATGACCGGC GCGATTTCGT CAACGACTTT CATGGCGACA
CGCTCAGGTC CACCGCCATT CTCGAAGAAG TTCGGCTTCC TGGTGGTCAA TGTCCTGTGG
CTCGTTTTCT CGATCGTCGG CGCCATTCCA CTTTGGCTAT CCTCGGTCAA TCTCGATTTT
GCCCAGGCCT TCTTCGAGTC CGTATCGGCG GTGACGACGA CCGGGTCGAC CGTCATCGTC
GGCCTCGATG ACGCCCCGCC GGGTCTTCTT CTTTGGCGCT CGCTTCTCAG TTGGCTGGGC
GGGATCGGTA TCGTCGTTCT CGGCCTCTTC ATCATCCCCT ACTTGCGCGT CGGCGGCATG
TCCTTTTTCA AGATGGAATC ATCCGACACG GGCGACAAAC CCTTTGCCCG GCTGGCAAGC
TTCGGCCGCG CCTTTCTCGT CATCTATGTA TCGATCACCC TGCTTTGCGC GATCAGTTAT
GGCGTGCTCG GAATGAGCCG GTTCGACGCG GTCAACCATG CCATGACGAC TGTCGCCACG
GGCGGCTTCT CGACGCACGA CGCTTCGTTC GGCTATTTCG CGAGCATCCC GCTGTTCTGG
GCCAGCACCT TCTTCATGGC GCTTTGCAGC CTCCCCTTCT CCATCCTGAT CGTGCTCTTC
GTTCGCGGGC GCCTGGATGC GCTTCGCGAC CCTCAAATCA TCGTTTTTCT GGGCTACCTC
ACGGCGTTCT CGGTTGCGGT CGCGACCTAT CACAGGCTTG CAAACGGCGT CGAATTCCAT
CTGGCGCTGA CGCATGCCTT CTTCAATGTG ACATCGCTTC TTTCGACCAC CGGTTATGCC
AGCGAGGACT ATAGCCTGTG GGGGCCCTTC GTGGTCATGG TCGCCTTCAT CTGCACCTTT
ATCGGCGGGT GCTCCGGCTC CACTGCCGGC GGCATGAAGG CATATCGATT CGTCGTGCTC
TTCAACGCCA TTCGGTCGGC CCTGAACAAA CTCGTATACC CGAACGCGAT CTATGCGGTC
CGCTACGGTA AAAATACGGT CGACGCGGAC GTGCAACGGG CGATTCTTCT GTTTTTCATT
ACCTATATTC TGCTCTGGGT TTTCGGCAGC CTGGTCATGG GTGCTCTCGG CTATGACTTC
ATCACGGCCG TATCGTCCGT AATCACATGC CTCTCCAACG TAGGTCCCGG CCTTGGGAGT
CTCGTCGGCC CCGCGGGGAA TTTCGCGACC TTCGAAGACG CCGAGCTTTA TCTGCTGTCT
CTGCTGATGC TGCTCGGCCG TCTTGAAGTC TTGACTGTGC TCGTCGTGCT CACACCGGTC
TTCTGGCGGC AGTAA
 
Protein sequence
MNANLIRHAV HLAAILGLYL SGAMLIPAFV DLYYGHPDWQ VFAVTAFMTG AISSTTFMAT 
RSGPPPFSKK FGFLVVNVLW LVFSIVGAIP LWLSSVNLDF AQAFFESVSA VTTTGSTVIV
GLDDAPPGLL LWRSLLSWLG GIGIVVLGLF IIPYLRVGGM SFFKMESSDT GDKPFARLAS
FGRAFLVIYV SITLLCAISY GVLGMSRFDA VNHAMTTVAT GGFSTHDASF GYFASIPLFW
ASTFFMALCS LPFSILIVLF VRGRLDALRD PQIIVFLGYL TAFSVAVATY HRLANGVEFH
LALTHAFFNV TSLLSTTGYA SEDYSLWGPF VVMVAFICTF IGGCSGSTAG GMKAYRFVVL
FNAIRSALNK LVYPNAIYAV RYGKNTVDAD VQRAILLFFI TYILLWVFGS LVMGALGYDF
ITAVSSVITC LSNVGPGLGS LVGPAGNFAT FEDAELYLLS LLMLLGRLEV LTVLVVLTPV
FWRQ