| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_1269 |
|---|
| Symbol | |
|---|
| ID | 5322116 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009636 |
|---|
| Strand | - |
|---|
| Start bp | 1362916 |
|---|
| End bp | 1363800 |
|---|
| Gene Length | 885 bp |
|---|
| Protein Length | 294 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 640790210 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_001326954 |
|---|
| Protein GI | 150396487 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0300] Short-chain dehydrogenases of various substrate specificities |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.618635 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 0.87927 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGGCGC CTGGTCAAGA TCGCCCCGCT GTCGTCGTCA TCGGTGCGTC GCGCGGAATC
GGCAAGGCCA TTGCCGACGT GGCCGCCAGG GATGGCGCGC CGGTCGTATT GGTGGCGCGT
TCGGCCGAGA CGCTCGCCAC CGCCGCTGAC GATATCCGAA AGGCCGGAGG CGAGGCGTAT
ACACTCTCGC TGGATCTGCT GGCTGAAAAT GCGGCCGGCG GTGTCGACGA CTTCCTGTCC
GCAAACGGCC TGTTCTGCGA CGTGCTCGTC AACAGCGCCG GTTTTGGCCT GCGCGGAGGC
GCGGCGGTCC TGCCGCTCGA AGAGCAGCTC GGTCTCGTCG ATCTCAACAT TCGCGCCCTG
ACAGAGCTCA CCTTGCGCCT CCTCCCGGGA ATGGTCGCGC GCCGGCGCGG CGGCGTCATC
AACCTCGGCT CGGTCGCAAG CTTTACGCCC GGCCCTTACA TGGCGCTCTA CTACGCCAGC
AAGGGTTTCG TTCGCTCGTT TTCAGAAGCG CTGCACCAGG AACTGCGCCG CACCGGTGTG
ACCGTCACAT GCGTGGCTCC CGGTCCGGTC GCAACGGAGT TTCTGTCGAC CTCCGGCGCC
AATCGCGTCG CACTGTTCAA GATCTTGCCC AAGCTCGAGC CGGGCTATGT CGCTGAAAGG
GCCTGGCGCG GTTTCAAAGC AGGCCGCCGT CTGGTGATAC CCGGCCTCTC GGCCAAGCTG
ACGATTCTGT TGGCTACGCT GGTGCCCTCG GCAATCATGC TCCCCCTGAT CGGCCGGCTG
CAGCGCAGGA GCAAGGATCC TTGCCCCTGC GGTTCGGGTA GGAGCTACAC GGCATGCTGC
GGCGCTCGCG GCAGCTCTCG CGACATCTCA ACGCAAAGCG GATAG
|
|---|
| Protein sequence | MTAPGQDRPA VVVIGASRGI GKAIADVAAR DGAPVVLVAR SAETLATAAD DIRKAGGEAY
TLSLDLLAEN AAGGVDDFLS ANGLFCDVLV NSAGFGLRGG AAVLPLEEQL GLVDLNIRAL
TELTLRLLPG MVARRRGGVI NLGSVASFTP GPYMALYYAS KGFVRSFSEA LHQELRRTGV
TVTCVAPGPV ATEFLSTSGA NRVALFKILP KLEPGYVAER AWRGFKAGRR LVIPGLSAKL
TILLATLVPS AIMLPLIGRL QRRSKDPCPC GSGRSYTACC GARGSSRDIS TQSG
|
|---|
| |