Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smed_1242 |
Symbol | |
ID | 5322089 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sinorhizobium medicae WSM419 |
Kingdom | Bacteria |
Replicon accession | NC_009636 |
Strand | - |
Start bp | 1332956 |
End bp | 1333942 |
Gene Length | 987 bp |
Protein Length | 328 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 640790183 |
Product | lytic transglycosylase catalytic |
Protein accession | YP_001326927 |
Protein GI | 150396460 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.270703 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 0.374797 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATCGGGC ACGAAAACAC AGGTACAATC AGCATCTGGA GCATCCGAAA CAAGCGTTTG CTGCGCTTTG CCGCAACCAT GTTCTCTGCC GCGGCGCTGA TCTTCGCCGA TCAATATCGG CTCGCCGAGG CTCGCACCGA CGCGCCAGCT CCGCCGAAAA AATGCTTGTA TTCGGGAGTG TCGTCAGAAA ACCCATCCCT TCGTCTCTGC ATCAGCCCCG ATAATTTCTC TCGCGACGTC TGCACCATTA TTGAACACTA TGCCAAGGCG AACGACCTGC CTGCCCCTTT CTTTGCCCGG CTGATCTGGC GCGAAAGCCT TTTCCAGCCC GACGCCATCA GCCCGAAGGG CGCGGAGGGG ATTGCCCAGT TCATGCCCGG GACGGCAAAG CTGCGCGGGT TGTCGGACAG TTTCAACGCT GTGGCGGCCC TCGGCAAATC GGCGGAATAT TTAAGCGAGC TCAAGTCGCG TTACGGCAAT CTTGGCTTTG CGGCGGCGGC CTATAATGCT GGCGAGGCCG GCCTCGAGCG CTTCCTCGAA AAAGACCGGC TGCCCTATGA AACGCGGGAT TACGTGCTGG CGATCACGGC CTACTCGGTC GAGGACTGGC GCGACAATCC ACCGAAATCG CTCAATATCG AACTCGACAA GGAAAAAAGC TTTCTCGACG GCTGCGTTGC ACTCGCCGAC ACGCGGCGCC TGCGCGAGCT GGTGGTCGCC GACGAAGCCG TCTGGGCGCC CTGGGGGATT CAACTTTCGG CGCACTACCA GAAATCCGTG GCGCAACGCT TGTTCATGAA TGCCGTGAAA AGATTGCCAG CGCCGATCAA CAGCGAAAAG GCGGTTCTTG TTCGGGAGCG CAACGGCAGT TTCGGAGGCA GACGCCGCTA CGCCGCCCGC ATCGGCCGGC AGACACGTGC CGAAGCCGAT CAGCTTTGCG CCGCTATCCG CAAGAGCGGC GGTGCCTGCA TCGTCTTCAA GAACTGA
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Protein sequence | MIGHENTGTI SIWSIRNKRL LRFAATMFSA AALIFADQYR LAEARTDAPA PPKKCLYSGV SSENPSLRLC ISPDNFSRDV CTIIEHYAKA NDLPAPFFAR LIWRESLFQP DAISPKGAEG IAQFMPGTAK LRGLSDSFNA VAALGKSAEY LSELKSRYGN LGFAAAAYNA GEAGLERFLE KDRLPYETRD YVLAITAYSV EDWRDNPPKS LNIELDKEKS FLDGCVALAD TRRLRELVVA DEAVWAPWGI QLSAHYQKSV AQRLFMNAVK RLPAPINSEK AVLVRERNGS FGGRRRYAAR IGRQTRAEAD QLCAAIRKSG GACIVFKN
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