Gene Smed_1242 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_1242 
Symbol 
ID5322089 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009636 
Strand
Start bp1332956 
End bp1333942 
Gene Length987 bp 
Protein Length328 aa 
Translation table11 
GC content60% 
IMG OID640790183 
Productlytic transglycosylase catalytic 
Protein accessionYP_001326927 
Protein GI150396460 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.270703 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value0.374797 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATCGGGC ACGAAAACAC AGGTACAATC AGCATCTGGA GCATCCGAAA CAAGCGTTTG 
CTGCGCTTTG CCGCAACCAT GTTCTCTGCC GCGGCGCTGA TCTTCGCCGA TCAATATCGG
CTCGCCGAGG CTCGCACCGA CGCGCCAGCT CCGCCGAAAA AATGCTTGTA TTCGGGAGTG
TCGTCAGAAA ACCCATCCCT TCGTCTCTGC ATCAGCCCCG ATAATTTCTC TCGCGACGTC
TGCACCATTA TTGAACACTA TGCCAAGGCG AACGACCTGC CTGCCCCTTT CTTTGCCCGG
CTGATCTGGC GCGAAAGCCT TTTCCAGCCC GACGCCATCA GCCCGAAGGG CGCGGAGGGG
ATTGCCCAGT TCATGCCCGG GACGGCAAAG CTGCGCGGGT TGTCGGACAG TTTCAACGCT
GTGGCGGCCC TCGGCAAATC GGCGGAATAT TTAAGCGAGC TCAAGTCGCG TTACGGCAAT
CTTGGCTTTG CGGCGGCGGC CTATAATGCT GGCGAGGCCG GCCTCGAGCG CTTCCTCGAA
AAAGACCGGC TGCCCTATGA AACGCGGGAT TACGTGCTGG CGATCACGGC CTACTCGGTC
GAGGACTGGC GCGACAATCC ACCGAAATCG CTCAATATCG AACTCGACAA GGAAAAAAGC
TTTCTCGACG GCTGCGTTGC ACTCGCCGAC ACGCGGCGCC TGCGCGAGCT GGTGGTCGCC
GACGAAGCCG TCTGGGCGCC CTGGGGGATT CAACTTTCGG CGCACTACCA GAAATCCGTG
GCGCAACGCT TGTTCATGAA TGCCGTGAAA AGATTGCCAG CGCCGATCAA CAGCGAAAAG
GCGGTTCTTG TTCGGGAGCG CAACGGCAGT TTCGGAGGCA GACGCCGCTA CGCCGCCCGC
ATCGGCCGGC AGACACGTGC CGAAGCCGAT CAGCTTTGCG CCGCTATCCG CAAGAGCGGC
GGTGCCTGCA TCGTCTTCAA GAACTGA
 
Protein sequence
MIGHENTGTI SIWSIRNKRL LRFAATMFSA AALIFADQYR LAEARTDAPA PPKKCLYSGV 
SSENPSLRLC ISPDNFSRDV CTIIEHYAKA NDLPAPFFAR LIWRESLFQP DAISPKGAEG
IAQFMPGTAK LRGLSDSFNA VAALGKSAEY LSELKSRYGN LGFAAAAYNA GEAGLERFLE
KDRLPYETRD YVLAITAYSV EDWRDNPPKS LNIELDKEKS FLDGCVALAD TRRLRELVVA
DEAVWAPWGI QLSAHYQKSV AQRLFMNAVK RLPAPINSEK AVLVRERNGS FGGRRRYAAR
IGRQTRAEAD QLCAAIRKSG GACIVFKN