Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smed_1233 |
Symbol | |
ID | 5322080 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sinorhizobium medicae WSM419 |
Kingdom | Bacteria |
Replicon accession | NC_009636 |
Strand | - |
Start bp | 1314286 |
End bp | 1318077 |
Gene Length | 3792 bp |
Protein Length | 1263 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 640790174 |
Product | ribonucleotide-diphosphate reductase subunit alpha |
Protein accession | YP_001326918 |
Protein GI | 150396451 |
COG category | [F] Nucleotide transport and metabolism |
COG ID | [COG0209] Ribonucleotide reductase, alpha subunit |
TIGRFAM ID | [TIGR02504] ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.521746 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 0.0561989 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGGATCG AGCGTCGATT CACGAAGGCC GGGCAATCCG CCTATGCCGA AATAGAATTC CGCAAGGCGA CGAGTGAGAT CAAGAACCCG GACGGGTCGG TGGTCTTTCG TCTCGCGGAT ATCGACGTAC CCGCGCAGTT CTCGCAGGTC GCGGCCGACA TCCTCGCCCA GAAGTATTTC CGCAAGGCGG GCGTGCCCGC AAAGCTGAAG CGGGTCGAGG AAAACGACGT GCCGTCCTTT CTCTGGCGTT CGGTTCCGGA CGCCGACGCG CTGAAGGCGC TTCCGAAAGA AGAACAGTAC GGCTCCGAAA CGGATGCTCG CCAGGTTTTC GATCGCTTGG CCGGAACCTG GGCCTATTGG GGCTGGAAGG GTGGCTATTT CGACACGGAA GAAGACGCCA GCGCCTTCCG CGACGAGCTC GCCTATATGC TCGCTACCCA GCGCGTCGCG CCGAATTCGC CGCAATGGTT CAACACCGGC CTCCACTGGG CCTATGGCAT TGACGGCCCC GGCCAGGGAC ATTTCTATGT CGATCCCTTC ACCGGCAAGC TGACGAAGTC GAAGTCCGCC TACGAACATC CGCAGCCGCA TGCCTGCTTC ATCCAGTCCG TCGGAGACGA CCTCGTCAAC GAGGGCGGCA TCATGGATCT GTGGGTGCGC GAAGCGCGCC TCTTCAAATA CGGCTCCGGC ACCGGCTCCA ACTTCTCCTA TGTGCGCGCC GAGGGCGAGA AGCTCTCGGG CGGCGGCAAG TCTTCCGGCC TGATGAGCTT CCTGAAGATC GGCGACCGCG CCGCGGGCGC CATCAAGTCG GGCGGCACGA CACGTCGCGC GGCCAAGATG GTCGTCGTCG ACATCGACCA CCCGGATATC GAGGAATATA TCAACTGGAA GGTCAAGGAA GAGCAGAAGG TTGCCGCCCT CGTCACCGGC TCGAAGATCG TCGCCAAGCA CCTGAAGGCG ATCATGAAGG CCTGCATCAA TTGCGACGGC AGCGACGATG CCTGCTTCGA TCCGAAGCAG AACCCGGCGC TGAAGCGCGA GATCCGCGCC GCAAAGCAGT CACTGGTACC GGAGAACTAT GTCAAGCGCG TCATCCAGTT CGCGCGCCAG GGCTACAAGG ACATCGAATT CAAGACTTAC GACACGGATT GGGATTCGGA GGCCTATCTC ACCGTTTCCG GCCAGAACTC CAACAATTCC GTCTCGATCA AGGACGATTT CCTTCGCGCC GTGGAAGCGG ATGGCGATTG GCACCTGACC GCCCGCAAGG ACGGCCGCGT CATGAAGACC CTGAAGGCGC GCGACCTCTG GGAGTCGATC TCGCATGCCG CCTGGGCCTC CGCCGATCCG GGCCTGCACT TCAACACGAC GATGAACGAT TGGCACACCT GCCCCGCTGC GGGGCCGATC CGCGCATCGA ACCCGTGCTC GGAATACATG TTCCTCGACG ACACGGCGTG CAATCTCGCA TCGCTCAACC TGATGCAGTT CAAGGATGCC GCGAACAAGC GGATCAATAT CGGCGACTAC GAGCATGCCG TCCGCCTTTG GACGGTCGTT CTCGAAGTCT CGGTGATGAT GGCTCAGTTC CCCTCCCGCG AGATCGCCGA ACTTTCCTAT GCCTATCGCA CGCTCGGCCT CGGCTATGCC AATATCGGCG GCCTTCTGAT GTCGTCCGGC ATTCCCTATG ACTCGCCCGA GGGCCGCGCC ATCGCCGGCG CATTGACCGC GATCATGACC GGTGTCGCCT ATGCCACCTC GGCCGAGATT TCCGCAAAGC TCGGCCCCTT CCCCGGATTT GCGCCGAACC GCGACAACAT GCTGCGCGTC ATGCGCAATC ACCGGCGCGC CGCTTATGGC GAGACCGCCG GTTATGAGGG CCTGTCCGTC AACCCGGTCG CGCTCGTCCA TGGCGATTGC CCGGACCAGG ACCTGATCGC CCATGCAAAG AGCGCCTGGG ACCAGGCGGT CGAGCTCGGA GAGAAGCACG GCTACCGCAA CGCCCAGGCC ACGGTGATCG CGCCGACCGG TACGATCGGG CTCGTCATGG ATTGCGACAC GACCGGCATC GAACCCGATT TCGCCCTGGT GAAATTCAAG AAGCTCGCCG GCGGCGGCTA CTTCAAGATC ATCAACCGTG CGGTTCCCGA GGCGCTGCGC ACGCTCGGCT ATTCGGAAAG CCAGATCGCC GAGATGGAGG CTTATGCCGT CGGCCACGGC AATCTCAACC AGGCACCGGC CATAAATCCC ACGACGCTGA AGGTCAAGGG CTTCACCGAC GAGAAGATCG AAGCCGTCAA CGCGGCACTG AAGGCTGCCT TCGACATCAA GTTCGTCTTC AACCAGTGGA CGCTGGGTGC AGATTTCCTC AAGGGCACGC TGCAGGTCAG CGATGAGCAG CTTGCATCGG TGGACTTCAA CCTGCTCGAG CATCTGGGCT TCTCCAGGAA GGACATCGAA ACCGCCAACA TCCATGTCTG CGGCGCGATG ACGCTCGAAG GCGCACCCTT CCTGAAAGCG GAGCACCTGC CTGTCTTCGA CTGCGCCAAT CCCTGCGGCA AGATCGGCAA GCGCTATCTT TCAGTCGAAA GCCACATCCG CATGATGGCG GCTGCCCAGC CCTTCATCTC GGGCGCAATC TCCAAGACGA TCAACATGCC GAACGAGGCG ACCGTCGAGG ACTGCAAGAA CGCCTATATG CTTTCCTGGA AGCTCGCGCT GAAGGCCAAT GCGCTCTACC GCGACGGCTC CAAGCTCTCG CAGCCGCTCA ACTCCTCGCT GATCGAGGAC GAGGAAGACG AGGATGCGAT CGAAGACCTG ATGCAGGCAC CGGCCGCCGC CCAGGCCGTC GCCATCACCG AGAAGATCGT GGAGCGCGTC ATCGAGAGGG TGGTGCGTGC CCGCGAGAAG CTGCCGAACC GCCGTCAGGG CTACACCCAG AAAGCGGTCG TCGGCGGTCA CAAGGTATAT CTGCGCACCG GCGAATTCGG CGACGGGCGC CTTGGCGAGA TCTTCATCGA CATGCACAAG GAAGGTGCGG CCTTCCGGGC GATGATGAAC AACTTCGCCA TCGCCATCTC GCTCGGCCTG CAATATGGCG TGCCGCTCGA GGAATATGTT GAGGCCTTCA CCTTCACCAA ATTCGAGCCG GCCGGCATGG TCCAGGGCAA TGACGCCATC AAGAACGCGA CGTCGATCCT CGACTACGTC TTCCGCGAAC TTGCCGTGTC TTATCTCGGC CGTCACGACC TTGCTCATGT CGATACCTCC GACTTCAGCA ACACCGCGCT CGGCCGCGGC ATTCAGGAAG GCAAGACCAA CCTCGTCTCG ACCGGCTGGA CCCGCGGCTA CAAGCCGTCG ATCGTCGGTG GCACGGGCGA GCGCTCCGAG CCGAAGGGTG CCGCAACCGC CGCCCCCGCC CGCGCCTCCG GCGGCGCGTC GGTAACCTCG ATCTCCGGCA ATGCCGTGCG CAAGCTGGAG CCGGCAATCG CCGCCGCCTC CTCCGAAGTC GTCGCCTTCA AGCGCGACTA CGAGGAACGA GCCGTCGAAC TCGCCGAGGA GATCGCCGAA GAAGCGGAAC AGGAAGTGAC CGCCCTCTTC TCCGACAAGG CTGCGGCAGA GGCCGCTGCG GCAAAGTCGG AGGCAAAGAA GGTGGAAGCC GAGCGCCGCG CCCGCTCGAT CATGCAGGGC TATACCGGCA ACATGTGCTC CGAATGCCAG AACTTCACGA TGGTGAGGAA CGGGACGTGC GAGAAGTGCG ACACGTGCGG TGCGACGAGC GGGTGCTCGT GA
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Protein sequence | MRIERRFTKA GQSAYAEIEF RKATSEIKNP DGSVVFRLAD IDVPAQFSQV AADILAQKYF RKAGVPAKLK RVEENDVPSF LWRSVPDADA LKALPKEEQY GSETDARQVF DRLAGTWAYW GWKGGYFDTE EDASAFRDEL AYMLATQRVA PNSPQWFNTG LHWAYGIDGP GQGHFYVDPF TGKLTKSKSA YEHPQPHACF IQSVGDDLVN EGGIMDLWVR EARLFKYGSG TGSNFSYVRA EGEKLSGGGK SSGLMSFLKI GDRAAGAIKS GGTTRRAAKM VVVDIDHPDI EEYINWKVKE EQKVAALVTG SKIVAKHLKA IMKACINCDG SDDACFDPKQ NPALKREIRA AKQSLVPENY VKRVIQFARQ GYKDIEFKTY DTDWDSEAYL TVSGQNSNNS VSIKDDFLRA VEADGDWHLT ARKDGRVMKT LKARDLWESI SHAAWASADP GLHFNTTMND WHTCPAAGPI RASNPCSEYM FLDDTACNLA SLNLMQFKDA ANKRINIGDY EHAVRLWTVV LEVSVMMAQF PSREIAELSY AYRTLGLGYA NIGGLLMSSG IPYDSPEGRA IAGALTAIMT GVAYATSAEI SAKLGPFPGF APNRDNMLRV MRNHRRAAYG ETAGYEGLSV NPVALVHGDC PDQDLIAHAK SAWDQAVELG EKHGYRNAQA TVIAPTGTIG LVMDCDTTGI EPDFALVKFK KLAGGGYFKI INRAVPEALR TLGYSESQIA EMEAYAVGHG NLNQAPAINP TTLKVKGFTD EKIEAVNAAL KAAFDIKFVF NQWTLGADFL KGTLQVSDEQ LASVDFNLLE HLGFSRKDIE TANIHVCGAM TLEGAPFLKA EHLPVFDCAN PCGKIGKRYL SVESHIRMMA AAQPFISGAI SKTINMPNEA TVEDCKNAYM LSWKLALKAN ALYRDGSKLS QPLNSSLIED EEDEDAIEDL MQAPAAAQAV AITEKIVERV IERVVRAREK LPNRRQGYTQ KAVVGGHKVY LRTGEFGDGR LGEIFIDMHK EGAAFRAMMN NFAIAISLGL QYGVPLEEYV EAFTFTKFEP AGMVQGNDAI KNATSILDYV FRELAVSYLG RHDLAHVDTS DFSNTALGRG IQEGKTNLVS TGWTRGYKPS IVGGTGERSE PKGAATAAPA RASGGASVTS ISGNAVRKLE PAIAAASSEV VAFKRDYEER AVELAEEIAE EAEQEVTALF SDKAAAEAAA AKSEAKKVEA ERRARSIMQG YTGNMCSECQ NFTMVRNGTC EKCDTCGATS GCS
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