| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_1149 |
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| Symbol | |
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| ID | 5321995 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009636 |
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| Strand | + |
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| Start bp | 1220069 |
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| End bp | 1221439 |
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| Gene Length | 1371 bp |
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| Protein Length | 456 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 640790090 |
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| Product | TolC family type I secretion outer membrane protein |
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| Protein accession | YP_001326835 |
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| Protein GI | 150396368 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01844] type I secretion outer membrane protein, TolC family |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.435165 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTGTCGA TTGTCCGCAA AGCAGCCTTG TGGGCGGCTG TCTCGACCAG TGTGCTGCTC
GCGCCCCATG CCGTTCTCGC GGAGACGATT TTCGGGGCGA TGGCCAAGGC CTATGCGAAC
AACCCGGATC TCAATGCCGC TCGCGCCGGG TTGCGGGCTA CGGATGAAGG GGTTCCGATC
GCGAAGTCAG GCTTTCGGCC GCAGATTTCC GCATCCGCGA CGGGAACCCT GACGCGGCTC
GACCAGGAAA AAAGTCGGGC GCAAGACCTT CATGCCGGGC AGGTAGGCAT CTCCATCACG
CAGATGATCT TCGATGGATT TCAGACGCTG AACAATGTCC GCGCCGCCGA AGCGGAGGTT
TTTTCGAGTC GCGAAACGCT GAAGGCCAAT GAGATTCAGA TCCTGCTTTC GGCCGCGCAA
TCCTATGCTA ACATCGCACG CGACCAGCAG ATCGTTTCCA TCCGCCGGCA GAACCTGGCC
TTCCTCAGGG AGCAGCTGAA CGCAGCGCAG GCCCGCCTCG ATGTGGGCGA GGGCACGCGG
ACCGATGTGA GCCAGGCGCA GGCGGAACTC GCCAACGCTC AGTCGCTGCT CGTCGCTGCC
GTCGCGCAGC TGAAGCAGAG CGAGGCGGTT TATGTGCAGA TCGTCGGCGC GGCGCCGACC
GGCATCAGGC AGCCGGGGCC TGCGACCAAG GCCATGCCAA GGTCGCTCGA CCAGGCCGTT
GCGACCGGGC TGCGCGAAAA CCCGCAAATC CTGGCGGCTC AATATGCCGT CGATTCGGCC
GGCTATCAGG TCAAGTCCGC CGAAGGCACG ATGTTGCCCG GCGTCGTCCT CCAGGGCGCC
GTAACGCGCA ACACCGGAAA TGCCGGTCAG GGGCTTGATG ACACGACCGC GAGTGTCACG
GCCCGGCTCG AAGTTCCGAT TTATCAGGGC GGTGCGGAAT ATGGTCAGAT TCGCCAAGCC
AAGGAAATAC TCGGACAGCA GCGGATCCTC GTCGACTCTG CACGCGCTTC GGTGCAGCAG
ACCGTCGTCT CGGCCCATGC GCAGCTCGAA TCCGCGCTCG CCAGAATCCG AGCCAGCAGG
TCGCAGATCT CCGCCGCGAA CCTGGCGCTG GAGGGCGTGA TCGAAGAACG CAAGGTCGGC
CAGCGCACGA CACTGGATGT GCTCGATGCA CAGCAGGACG TTCTGGATGC GCAGGAGTCG
CTGGCCGGGG CGCAGCGTGA TGCCGTGGTT GCCAGTTATG CCCTGCTCGC CGCAATGGGG
CACCTCACCG TCAGGAGTCA GGGCCTCCAG GTGGCTGAAT ACCGGGCCGA GGAACACTAC
GAGGCCGTCA AGGACAAGTG GTTCGGACTG CGTACCGTCG ACGGACGCTA G
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| Protein sequence | MVSIVRKAAL WAAVSTSVLL APHAVLAETI FGAMAKAYAN NPDLNAARAG LRATDEGVPI
AKSGFRPQIS ASATGTLTRL DQEKSRAQDL HAGQVGISIT QMIFDGFQTL NNVRAAEAEV
FSSRETLKAN EIQILLSAAQ SYANIARDQQ IVSIRRQNLA FLREQLNAAQ ARLDVGEGTR
TDVSQAQAEL ANAQSLLVAA VAQLKQSEAV YVQIVGAAPT GIRQPGPATK AMPRSLDQAV
ATGLRENPQI LAAQYAVDSA GYQVKSAEGT MLPGVVLQGA VTRNTGNAGQ GLDDTTASVT
ARLEVPIYQG GAEYGQIRQA KEILGQQRIL VDSARASVQQ TVVSAHAQLE SALARIRASR
SQISAANLAL EGVIEERKVG QRTTLDVLDA QQDVLDAQES LAGAQRDAVV ASYALLAAMG
HLTVRSQGLQ VAEYRAEEHY EAVKDKWFGL RTVDGR
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