| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_1090 |
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| Symbol | |
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| ID | 5321936 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009636 |
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| Strand | + |
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| Start bp | 1157790 |
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| End bp | 1159244 |
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| Gene Length | 1455 bp |
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| Protein Length | 484 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 640790031 |
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| Product | nitrogen metabolism transcriptional regulator, NtrC, Fis family |
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| Protein accession | YP_001326776 |
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| Protein GI | 150396309 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | [TIGR01818] nitrogen regulation protein NR(I) |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.440204 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGGGTG CAACGATCCT TGTCGCGGAT GACGATGCAG CCATTCGCAC CGTTCTGAAT
CAGGCGCTCA GCCGTGCCGG ATACGATGTG CGCATCACCT CCAATGCCGC CACACTATGG
CGCTGGATAG CCGCCGGCGA CGGCGATCTG GTCGTGACCG ATGTCGTGAT GCCGGATGAG
AACGCCTTCG ATCTCCTGCC GCGGATCAAG AAAGCTCGGC CGGATCTGCC GGTGCTTGTG
ATGAGCGCTC AAAACACCTT CATGACGGCC ATCAAGGCTT CGGAAAAGGG CGCCTATGAC
TATCTGCCGA AGCCGTTCGA TCTGACGGAG CTGATCGGCA TTATCGGCCG GGCGCTCGCC
GAACCGAAGC GGCGGCCGTC GAAACTCGAC GACGATTCCC AGGACGGCAT GCCTCTCGTC
GGACGCTCCG CCGCGATGCA GGAAATCTAC CGCGTGCTTG CCCGGTTGAT GCAGACGGAC
CTGACGCTGA TGATCACCGG CGAGTCGGGA ACCGGCAAGG AACTGGTTGC GCGGGCATTG
CACGATTATG GCAAGCGGAG AAACGGTCCC TTCGTCGCCA TCAATATGGC GGCGATTCCG
CGCGATCTCA TCGAGTCGGA ACTGTTCGGT CACGAAAAGG GGGCTTTCAC CGGCGCTCAA
ACCCGCTCCA CCGGTCGTTT CGAGCAGGCC GAAGGGGGAA CGCTCTTCCT CGATGAGATC
GGCGACATGC CCATGGATGC GCAGACGCGT CTCCTGCGTG TGCTGCAGCA GGGCGAATAC
ACGACCGTCG GCGGACGCAC GCCGATTAGA TCGGACGTCC GCATCGTCGC GGCAACCAAC
AAGGACCTGA AACAATCGAT CAATCAGGGT CTTTTCCGCG AGGACCTCTA CTATCGTCTG
AACGTCGTGC CGCTTCGCCT GCCGCCGCTT CGGGACCGGG CCGAGGATAT TCCGGATCTC
GTCCGCCACT TCGTCCAGCA AGCCGAAAAA GAGGGCCTGG ACGTCAAGCG CTTCGATCAG
GAGGCGCTGG AGCTGATGAA AGCACATCCC TGGCCGGGCA ATGTGCGCGA ACTCGAAAAC
CTCATTCGCC GTTTGACGGC ACTTTATCCA CAGGACGTCA TCACGCGCGA AATCATCGAA
AACGAGCTGC GTTCGGAGAT CCCGGACAGT CCGATCGAGA AAACCGCAGC CCGCTCCGGC
TCGCTGTCGA TCTCGCAGGC CGTGGAGGAG AACATGAGGC AGTATTTCGC GAGCTTTGGC
GATGGTTTAC CGCCCTCTGG TCTTTATGAC CGCGTCCTCG CGGAGATGGA ATATCCTCTG
ATTCTCGCGG CCTTGACGGC TACCCGCGGC AACCAGATCA AGGCGGCCGA CCTGCTGGGT
CTCAACCGCA ATACGCTGCG CAAGAAGATC CGTGAACTCG GTGTCTCTGT CTATCGCAGC
TCGCGTAGCG CTTGA
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| Protein sequence | MTGATILVAD DDAAIRTVLN QALSRAGYDV RITSNAATLW RWIAAGDGDL VVTDVVMPDE
NAFDLLPRIK KARPDLPVLV MSAQNTFMTA IKASEKGAYD YLPKPFDLTE LIGIIGRALA
EPKRRPSKLD DDSQDGMPLV GRSAAMQEIY RVLARLMQTD LTLMITGESG TGKELVARAL
HDYGKRRNGP FVAINMAAIP RDLIESELFG HEKGAFTGAQ TRSTGRFEQA EGGTLFLDEI
GDMPMDAQTR LLRVLQQGEY TTVGGRTPIR SDVRIVAATN KDLKQSINQG LFREDLYYRL
NVVPLRLPPL RDRAEDIPDL VRHFVQQAEK EGLDVKRFDQ EALELMKAHP WPGNVRELEN
LIRRLTALYP QDVITREIIE NELRSEIPDS PIEKTAARSG SLSISQAVEE NMRQYFASFG
DGLPPSGLYD RVLAEMEYPL ILAALTATRG NQIKAADLLG LNRNTLRKKI RELGVSVYRS
SRSA
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