| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_1029 |
|---|
| Symbol | |
|---|
| ID | 5321875 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009636 |
|---|
| Strand | + |
|---|
| Start bp | 1099550 |
|---|
| End bp | 1101091 |
|---|
| Gene Length | 1542 bp |
|---|
| Protein Length | 513 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 640789972 |
|---|
| Product | SpoVR family protein |
|---|
| Protein accession | YP_001326717 |
|---|
| Protein GI | 150396250 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG2719] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.06645 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGCACCG CCTCGAACCT TCTGTTCCAA AGTTCCGACT GGAATTTCGA AACGCTGGCG
CACACCTATG ATGCCATCGA GGAGATCGCG CTGGGCGATC TCGGTCTCGA CGTTTACCCC
AATCAGCTCG AGATCATCTC CTCCGAGCAG ATGCTGGATG CCTATTCGTC CGTGGGCATG
CCGCTCATGT ACCAGCATTG GTCCTTTGGA AAGCGCTTCG TCTTCGAGGA CCATCTCTAT
CGCAGAGGGC GGCGGGGGCT GGCTTACGAG CTGGTGATCA ACTCCAATCC CTGCATCACC
TATCTGATGG AGGAGAACAC CATGGCCATG CAGGCCCTGG TGACCGCACA TGCCGCCTTC
GGCCACAATC ATTTTTTCAA GAACAACTAT CTTTTCCGGC AGTGGACCGA CGCCACCGCA
ATCCTCAGCT ATATGGACTT CGCCAAGAAA TACATTGCCA AATGCGAAGA ACGGCACGGA
ACGCCGGCAG TGGAGGCGAT CCTCGACTCT GCGCATGCGC TCATGGAGCA GGGCGTCTTC
CGCTACCGAC GGCCTCCGCG CCTGTCGTCC GAAAAAGAAC GGGAACGGAT GCGCGAGAGG
CTGGAATATG AAGAGCAGAC CTATAGCGAC CTGTGGAGAA CACTTCCGCC ATCAGGGGAA
AACAACGATC CGACGCAATT GGAAAAGGAA CTCGCGGAGC GGAAAAAATC ACTGAACCTT
CCGGAAGAGA ACCTGCTCTA TTTCCTGGAA AAAACCAGCC TCATCCTTGA ACCATGGCAA
CGCGAGATAC TGCGGATCGT CCGCGTGATC GCTCAGTACT TCTACCCGCA GCGGCAGACG
AAGGTTATGA ACGAGGGATG CGCCACCTTC GTCCACTACA CCATCATGAA CAAGCTTTTC
GACCAGGGAA AGATAAGCGA AGGTGCAATG CTGGAGATCC TCCAGAGCCA TACCAACGTC
GTTTTTCAGC CCGGCTTCGA CGACCCCCGC TTTCCGGGAA TCAATCCGTA TGCGCTGGGA
TTTGCCATGA TGCAGGATAT CGAGCGGATC TGCGTCGCGC CTACGGCAGA GGACCGCGAT
TGGTTTCCCG ACATCGCCGG CACCGGCAAC TGGCGCGAAA CGCTCCTCGA CGCCTGGGCC
AATCATCGCG ACGAATCCTT CATCCTGCAG TTCCTGAGCC CGGCGCTGAT CCGAAAGTTC
AGGCTCTTCC TCTTGACGGA CGAAGCGGAC GACAACTTCT GCGAAGTGGC ATCCATCCAC
AACGAGCGCG GCTACGAAGC GTTGCGCGGC GCACTCGCCC GCAGCTATGA CATCGGGGTC
AACCAGCCCG ATATCCAGGT CATGGATGTC GATCTGCTCG GAGACCGCCA CCTGCGGCTG
CAGCACAATG TGAAGGATGG AGTGCTGCTG GAGGAGAACA GCCGCGATTC CACTCTGCGC
CACGTCCGCC ATCTCTGGGG ATACGAAGTG AGCTTAGCGG GGGTCGATGC GGAAACCGGC
GAAACGCTCT ATGAGTGCTC GACAGAGGAG CTTTCAGACT AG
|
|---|
| Protein sequence | MGTASNLLFQ SSDWNFETLA HTYDAIEEIA LGDLGLDVYP NQLEIISSEQ MLDAYSSVGM
PLMYQHWSFG KRFVFEDHLY RRGRRGLAYE LVINSNPCIT YLMEENTMAM QALVTAHAAF
GHNHFFKNNY LFRQWTDATA ILSYMDFAKK YIAKCEERHG TPAVEAILDS AHALMEQGVF
RYRRPPRLSS EKERERMRER LEYEEQTYSD LWRTLPPSGE NNDPTQLEKE LAERKKSLNL
PEENLLYFLE KTSLILEPWQ REILRIVRVI AQYFYPQRQT KVMNEGCATF VHYTIMNKLF
DQGKISEGAM LEILQSHTNV VFQPGFDDPR FPGINPYALG FAMMQDIERI CVAPTAEDRD
WFPDIAGTGN WRETLLDAWA NHRDESFILQ FLSPALIRKF RLFLLTDEAD DNFCEVASIH
NERGYEALRG ALARSYDIGV NQPDIQVMDV DLLGDRHLRL QHNVKDGVLL EENSRDSTLR
HVRHLWGYEV SLAGVDAETG ETLYECSTEE LSD
|
|---|
| |