Gene Smed_1002 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_1002 
SymbolrplR 
ID5321847 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009636 
Strand
Start bp1075881 
End bp1076243 
Gene Length363 bp 
Protein Length120 aa 
Translation table11 
GC content61% 
IMG OID640789944 
Product50S ribosomal protein L18 
Protein accessionYP_001326690 
Protein GI150396223 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0256] Ribosomal protein L18 
TIGRFAM ID[TIGR00060] ribosomal protein L18, bacterial type 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.168724 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value0.00975315 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGGCTAGCA GGAAAGATAC TCTTGTGCGT CGCGCCAGCC GCGTGCGCCG TCAAATCAAG 
GCGGTTGCCA ACGGCCGCCC GCGCCTGTCG GTTCATCGCT CGTCGAAGAA CATCTATGCG
CAGATCATCG ATGATGTTGC CGGCAAGACG ATTGCCTCGG CATCGACTCT CGACACGGAT
CTGCGTTTTT CGCTGAAGAC CGGCGCTGAT ACCGAAGCCG CTACGGCTGT CGGCAAGCTC
CTGGCGGAGC GTGCTTCCAA GGCGGGCGTC AAGGACGTTG TCTTTGACCG TGGCGCCTTC
ATCTACCACG GCCGCATCAA GGCGCTGGCC GAGGCAGCTC GCGAAGGCGG CCTGAACTTC
TAA
 
Protein sequence
MASRKDTLVR RASRVRRQIK AVANGRPRLS VHRSSKNIYA QIIDDVAGKT IASASTLDTD 
LRFSLKTGAD TEAATAVGKL LAERASKAGV KDVVFDRGAF IYHGRIKALA EAAREGGLNF