Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smed_0946 |
Symbol | gatB |
ID | 5321787 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sinorhizobium medicae WSM419 |
Kingdom | Bacteria |
Replicon accession | NC_009636 |
Strand | + |
Start bp | 1022099 |
End bp | 1023601 |
Gene Length | 1503 bp |
Protein Length | 500 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 640789886 |
Product | aspartyl/glutamyl-tRNA amidotransferase subunit B |
Protein accession | YP_001326636 |
Protein GI | 150396169 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0064] Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog) |
TIGRFAM ID | [TIGR00133] glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, B subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.209808 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 0.195446 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCATCG TCGACGTCCG CACTCCTGAT CCGAAACGCT TCATTCCGGG CGCCACCGGC GACTGGGAGG TCATCATCGG CATGGAAGTC CATGCGCAGG TGCTGAGCAA TTCGAAGCTG TTCTCCGGTG CATCGACCGA GTTCGGGTCC GAGCCGAACG CCAACGTTTC GCTTGTCGAT GCTGCAATGC CCGGCATGCT TCCGGTGATC AATGAGGAAT GCGTCAAGCA GGCCGTGCGC ACGGGCCTCG GCTTGAAGGC AAAGATCAAC AATCGTTCGA TCTTCGATCG GAAGAACTAC TTCTATCCGG ACCTGCCACA GGGCTACCAG ATCTCGCAAT ACAAGGACCC GATTGTCGGA GAAGGCAAGA TCATCATCTC CGTCGGACCG GACCGCCAGG GCCATTTCGA AGATGTGGAG ATCGGCATCG AGCGTCTGCA TCTGGAGCAG GATGCCGGCA AGTCGATGCA CGACCAGCAT CCAGCCATGT CCTATGTCGA TCTCAACCGC TCGGGTGTTG CGCTGATGGA GATCGTCTCG AAGCCGGATC TGCGTTCGTC GGACGAGGCG AAGGCCTATC TCACGAAGCT TCGCTCGATC CTGCGCTATC TCGGCACCTG CGACGGCAAT ATGGACGAGG GCTCGATGCG CGCGGACGTC AACGTCTCCG TTCGCCGCCC CGGCGAAGCA TTCGGCACGC GCTGTGAAAT CAAGAACGTC AACTCGATCC GCTTCGTCGG TCAGGCGATC GAATACGAGG CCCGTCGCCA GATCGCCATC CTTGAAGACG GTGGGGCAAT CGATCAGGAA ACGCGTCTCT TCGACCCGGG CAAGGGCGAG ACGCGTTCCA TGCGGTCGAA GGAAGATGCG CACGACTACC GCTACTTCCC CGACCCGGAT CTGCTGCCGC TCGAATTCGA CGATGCGTTC GTAGAGGCGC TGAAGGCACA CCTGCCGGAG TTGCCGGACG ACAAGAAGGA GCGCTTCGTC AGAGATCTCG GCCTGTCCGT CTACGACGCG TCCGTTCTCG TGTCGGAAAA GGCGATCGCC GACTACTTCG AGGCCGTGGC AGCTGGTCGC GACGGCAAGA CCGCGGCGAA CTGGGTCATC AACGACCTTC TCGGCGCGCT GAACAAGGCT GGAAAGCCTA TTGAGGGAAC GCCCGTCTCG CCGGCACAGC TTGGTGGCAT CATCGATCTC ATCAAGGATG GGACCATCTC CGGCAAGCTT GCGAAGGACC TCTTCGAAAT AGTCTGGAAC GAGGGCGGCG ATCCGGCGCA GATTGTCGAG AGCCGTGGTA TGAAGCAGGT AACCGATACC GGTGCGATCG AGAAGGCCGT CGACGAGATC ATCGCAGCCA ACCCCGACCA GGTGGAAAAG GCGAAGGCGA AGCCCTCGCT TGCCGGCTGG TTTGTAGGGC AGGTGATGAA GGCGACCGGC GGCAAGGCCA ACCCGCAGGC GGTGCAGGCG CTCGTAAAGT CCAAGCTCGG ATTCGAGGAA TGA
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Protein sequence | MSIVDVRTPD PKRFIPGATG DWEVIIGMEV HAQVLSNSKL FSGASTEFGS EPNANVSLVD AAMPGMLPVI NEECVKQAVR TGLGLKAKIN NRSIFDRKNY FYPDLPQGYQ ISQYKDPIVG EGKIIISVGP DRQGHFEDVE IGIERLHLEQ DAGKSMHDQH PAMSYVDLNR SGVALMEIVS KPDLRSSDEA KAYLTKLRSI LRYLGTCDGN MDEGSMRADV NVSVRRPGEA FGTRCEIKNV NSIRFVGQAI EYEARRQIAI LEDGGAIDQE TRLFDPGKGE TRSMRSKEDA HDYRYFPDPD LLPLEFDDAF VEALKAHLPE LPDDKKERFV RDLGLSVYDA SVLVSEKAIA DYFEAVAAGR DGKTAANWVI NDLLGALNKA GKPIEGTPVS PAQLGGIIDL IKDGTISGKL AKDLFEIVWN EGGDPAQIVE SRGMKQVTDT GAIEKAVDEI IAANPDQVEK AKAKPSLAGW FVGQVMKATG GKANPQAVQA LVKSKLGFEE
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