| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_0883 |
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| Symbol | |
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| ID | 5321721 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009636 |
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| Strand | - |
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| Start bp | 945840 |
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| End bp | 947315 |
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| Gene Length | 1476 bp |
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| Protein Length | 491 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640789820 |
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| Product | HlyD family type I secretion membrane fusion protein |
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| Protein accession | YP_001326573 |
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| Protein GI | 150396106 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | [TIGR01843] type I secretion membrane fusion protein, HlyD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.729698 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGCGGT CATCATCATT TTGGAAGCTT CCGCGCGGAA GCTCGCATCG GCGACGGGAT
GATGCCGAGT TCCTGCCGGC GGCGCTCGAG ATTCTCGAAA CGCCACCCTC TCCCATCCGG
GCATCGCTGA TCTGGCTCCT GTGTGCGCTC GCCGCCGGCG CGCTTTTATG GAGTTGGATC
GGGACATTCG ACATCGTGGC GACGTCACAG GGCAAGATCC AGCCACTCGG CAGGGTCAAG
GTCATCCAGT CTCTGGAGAC GAGCAAGACC CGCTCGGTGC CCGTCGCCAA TGGCCAGGAG
GTGAAGGCCG GCGACCTTCT CGTCGACCTC GACGATACCG AATTACGGGC CGACGCCGAT
ATGCTGTCCA TCGGCCTCGC GGCGCTCAGG GCCGATATTT CCCGGCGAGA CCACGCCCTT
GTCCTCGCCT CTGAACTCGG CATCGATGCA GAAGCCACAT CGTCTCGAAA GCCGGCGGCC
GAGATCGTGT TTCCGTCGGG AATCCCTCCC CAGATCCGGC GCCGCGAGCA GGCTGTGCTC
GAAGCCGACA TCTCCGAGCT CGTTTCTCTG CTCGACCGCA TTCGCGCCCA GAAGAGGCAG
AAGGAGGCGG AGGTTGCGCG GCTGTCTTCG ACCATAAATG CACAGCGTAC CCTGGTTGCG
ACGCTCGGCG AACGGGTGTC GATGCGAACG TCGCTGTTCA ATTCTCAATC CGGATCGAAG
GCAGAGGTCA TCAATGCCGC CGAGATATCG CAGCGCGCCG AAGCCGAACT GGCGGAAAGG
GTGGGACAAA TGGCCGAGGC CGAAACGGGT CTACAGGTTC TGGTCGCAGA GCGGACAAGC
GCGATCCGGG CGTTCATCGC CGAGAATGCC CGCCAGCGTG CCGATGTCGC CCGGCGCGCG
GACGAGCAGG AACAACAGCT TAGGAAGATC ACGGCTCGGC TCGGATCGAT GAAGATCCAC
AGTCCGATCG ACGGAACGGT TCAGGCTACG GCGATCACGA CCATCGGGCA GATCGTCAGT
TCGGGAACCG AGCTGATGCG CGTCGTGCCT CTCGTCGGAC CGATCGAGAT AGAAGCCTAT
CTCCCCAACA AAGACATAGG ATTCGTCAGC GCCGGGATGG CCGCGGTGAT AAAGATCGAA
GCATTCCCAT TCACCCGCTT CGGCGTCGTC GAAGGCAAGG TCGTCCAAGT CGCGACGGAC
GCCATTCCGG AGCCGGACGC GCAGCAGATC GAAGGGGCCG CTGCGAAGGA GATCGAAAGC
CTGATCCCAA TCGGCAATGT CCAGCGCATG CAGAACCTCG TCTTTCCTGT GACTGTGCGG
CCCAACCGCA CGACGATCAC GGTCAATGGT CGGGTCATGC CGCTGAAACC CGGCATGGCC
GTCACCGTGG AGATCAAGAC CGGAAGGCGA CGGATATTGG AATACCTGTT CTCGCCCATC
GCAAAGGTTG GGTCGGAGGC CATGGGGGAG AGGTGA
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| Protein sequence | MKRSSSFWKL PRGSSHRRRD DAEFLPAALE ILETPPSPIR ASLIWLLCAL AAGALLWSWI
GTFDIVATSQ GKIQPLGRVK VIQSLETSKT RSVPVANGQE VKAGDLLVDL DDTELRADAD
MLSIGLAALR ADISRRDHAL VLASELGIDA EATSSRKPAA EIVFPSGIPP QIRRREQAVL
EADISELVSL LDRIRAQKRQ KEAEVARLSS TINAQRTLVA TLGERVSMRT SLFNSQSGSK
AEVINAAEIS QRAEAELAER VGQMAEAETG LQVLVAERTS AIRAFIAENA RQRADVARRA
DEQEQQLRKI TARLGSMKIH SPIDGTVQAT AITTIGQIVS SGTELMRVVP LVGPIEIEAY
LPNKDIGFVS AGMAAVIKIE AFPFTRFGVV EGKVVQVATD AIPEPDAQQI EGAAAKEIES
LIPIGNVQRM QNLVFPVTVR PNRTTITVNG RVMPLKPGMA VTVEIKTGRR RILEYLFSPI
AKVGSEAMGE R
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