| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_0748 |
|---|
| Symbol | |
|---|
| ID | 5321585 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009636 |
|---|
| Strand | + |
|---|
| Start bp | 801944 |
|---|
| End bp | 803143 |
|---|
| Gene Length | 1200 bp |
|---|
| Protein Length | 399 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 640789685 |
|---|
| Product | aminodeoxychorismate lyase |
|---|
| Protein accession | YP_001326439 |
|---|
| Protein GI | 150395972 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1559] Predicted periplasmic solute-binding protein |
|---|
| TIGRFAM ID | [TIGR00247] conserved hypothetical protein, YceG family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.309418 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAGCGACT CAAACGATAA CAGCGCGGTA CAATTCGGCC GCAATGAAAC CGGGAGCAAC
GGGCCGATCA TTCCGAAGTC GGCCAATGAA GCGTTGCGTC CCGAGAGGGT TCCACACCCG
CCGAAGCGTT CACGCAAGGC GCGCAGCCAG GTCGTCATCT TTCTCAACTT CGTCATGACC
GCGGTTGTGT TCGTGGCGCT GGCGGCGGCC GGCGCCGTCT ATTATGCGAT GCATGAATAT
GAGAAGGCGG GGCCCCTGCA GGCGAACAAG AATTTCATCG TTCGCAGCGG CGCCGGCATC
AGCGAAATCG CCAGCAATCT GGAGCGCAAC GAGATCATCA CCGACAGCCG TGTTTTCCGC
TTCGTTTCGG AAGCTTATCT GAGCAATGAC ACGCTCAAGG CCGGCGAGTA TGAGATCAAG
GCGCATGCAT CGATGCAGGA GATCATGCAG CTCCTGAAAT CCGGAAAGTC GATCCTCTAT
TCCGTCTCGT TGCCGGAAGG TCTGACTGTG AAGCAGATGT TTCGCAAGCT TTCCGACGAC
CCGGTTCTGG TCGGCGACCT GCCGGCGGAA CTGCCGCCGG AAGGTTCTCT GAAACCGGAC
ACTTACAAGT TCACCCGAGG AACCGACCGT AACGAGATCG TCAAGCAGAT GATCGCTGCG
CAAAAGGCCC TGGTGCAGCA GATCTGGGAG AAGCGGGATC CGGACCTGCC CGTGTCAACC
ATCGAGGAAT TCGTCACTCT TGCCTCTATT GTGGAGAAGG AGACCGGTCG CGCGGACGAG
CGGCCGCGAG TGGCCTCCGT ATTCATCAAT CGCCTGGAAA AGGGCATGAG GCTGCAGTCG
GATCCGACGA TCATCTACGG CATCTTCGGT GGAGAAGGTA AACCCGCCGA CCGGGCTATC
CTGAGGTCCG ACCTCGACAA GCAGACCCCA TACAACACCT ACCTCATCAA GGGTCTTCCG
CCGACGCCGA TCGCAAATCC GGGTCGCGCC GCGCTTGAAG CCGTCGCCAA CCCGTCGCGC
ACGCCCGAAC TCTATTTTGT CGCCGATGGC ACTGGCGGAC ATGTCTTTGC CGAGACGCTC
GACGAACACA ACGCCAATGT CCGGCGCTGG CGCAAGCTCG AGGCGGAGAG GGCAGCGGAA
GCGGCCAAGG CCACCGAAGC GGCTGAAGAC GCCGTAACGC AGACTGGAAC GCAGCAGTAA
|
|---|
| Protein sequence | MSDSNDNSAV QFGRNETGSN GPIIPKSANE ALRPERVPHP PKRSRKARSQ VVIFLNFVMT
AVVFVALAAA GAVYYAMHEY EKAGPLQANK NFIVRSGAGI SEIASNLERN EIITDSRVFR
FVSEAYLSND TLKAGEYEIK AHASMQEIMQ LLKSGKSILY SVSLPEGLTV KQMFRKLSDD
PVLVGDLPAE LPPEGSLKPD TYKFTRGTDR NEIVKQMIAA QKALVQQIWE KRDPDLPVST
IEEFVTLASI VEKETGRADE RPRVASVFIN RLEKGMRLQS DPTIIYGIFG GEGKPADRAI
LRSDLDKQTP YNTYLIKGLP PTPIANPGRA ALEAVANPSR TPELYFVADG TGGHVFAETL
DEHNANVRRW RKLEAERAAE AAKATEAAED AVTQTGTQQ
|
|---|
| |