Gene Smed_0677 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_0677 
Symbol 
ID5321514 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009636 
Strand
Start bp728903 
End bp731128 
Gene Length2226 bp 
Protein Length741 aa 
Translation table11 
GC content61% 
IMG OID640789614 
Product(p)ppGpp synthetase I, SpoT/RelA 
Protein accessionYP_001326368 
Protein GI150395901 
COG category[T] Signal transduction mechanisms
[K] Transcription 
COG ID[COG0317] Guanosine polyphosphate pyrophosphohydrolases/synthetases 
TIGRFAM ID[TIGR00691] (p)ppGpp synthetase, RelA/SpoT family 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones27 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATGCGCC AATACGAGCT CGTCGAGCGC GTGCAGAAAT ACAAGCCCGA CGTCAACGAG 
GCCCTGCTGA ACAAGGCCTA TGTTTACGCC ATGCAGAAGC ATGGGCAGCA GAAGCGGGCA
AGCGGCGATC CCTACATCTC CCATCCCCTG GAGGTCGCGG CGATCCTGAC CGAAATGCAT
CTCGACGAAT CCACGATAGC CGTCGCGCTG CTGCACGACA CGATCGAGGA TACGACCGCG
ACGCGACAGG AAATCGACGG CCTCTTCGGC GAAGATATCG GTGCCTTGGT CGAAGGTCTC
ACCAAGATCA AGAAACTCGA CCTCGTCACC AAGAAGGCCA AGCAGGCGGA AAATCTGCGC
AAGCTGCTGC TCGCTATTTC GGACGACGTC CGCGTCCTCC TGGTCAAGCT CGCCGATCGC
CTCCACAATA TGCGTACGCT CGATCACATG TCGGCGGAAA AGCGCGCGCG CATTTCGGAG
GAGACGATGG ACATCTATGC GCCCCTGGCG GGGCGCATGG GCATGCAGGA TATGCGCGAG
GAGCTTGAAA ACCTCTCCTT TCGGCACATC AACCCGGAAG CCTACGAAAC CGTCACCAGA
CGCCTTCAGG AGCTCTCCGA ACGTAACGAA GGGCTGATCA AGAAGATCGA GGAGGAACTG
AGCGAATTGC TTCAGGCGGA GGGGCTTGCC GATGCCCAGG TCAAGGGGCG CCAGAAGAAG
CCTTACTCGG TTTTCCGCAA AATGCAGTCG AAATCGCTTT CCTTCGAGCA GCTCTCGGAC
GTCTGGGGCT TCCGTATCAT CGTCAGCGAC ATTCCGGCCT GCTATCGCGC GCTGGGTATC
GTGCACACCC GCTGGCGCGT CGTGCCCGGA CGCTTCAAGG ACTATATCTC GACGCCGAAG
CAGAACGACT ATCAATCCAT TCATACGACG ATCATCGGTC CGTCGCGCCA GCGCATCGAA
CTGCAAATCC GCACGAAGCG CATGCATGAG ATCGCCGAAT ACGGTATCGC GGCCCACGCA
CTCTACAAGG ATCGCGACAC TGTTTCCGGC GACCTGACGC GCACACCGAC ATCGAACGCC
TATTCCTGGC TGCGCCGCAC GATCGAATCT CTCGCCGAGG GTGATAATCC GGAGGAGTTC
CTCGAGCACA CCAAGCTCGA ACTCTTCCAG GATCAGGTCT TCTGCTTCAC TCCGAAGGGG
CAGCTGATAG CATTGCCGCG CGGTGCCACC CCGATCGACT TCGCCTATGC CGTGCATACG
AATATCGGCG ACACCTGCGT CGGGGCCAAG ATCAACGGTC GCATCATGCC CCTGGTGACG
CGGCTCAACA ATGGCGATGA AGTGGAGATC ATCCGTTCGG GCATTCAGGT GCCGCCGCCG
GCCTGGGAAG AGATCGTCGT CACGGGCAAG GCTCGGGCGG CCATCCGCCG CGCTACTCGC
GCCGCGATCC GCAAGCAATA TGCCGGCCTC GGCTATCGCA TCCTGGAGCG CACTTTCGAA
CGGGCAGGGA AGACGTTCTC GCGCGAGGCG TTGAAGCCGG TGCTGCATCG GCTCGGGCAA
AAGGACGTGG AAGACGCCAT CGCTGCGGTA GGACGCGGCG AACTCTCCTC GCTCGACGTT
CTGCGCGCCG TCTTCCCGGA TCATCAGGAC GAGCGCGTGA CCGTGAAGCC TAGCGCCGAT
GACGGCTGGT TCAACATGCG CAGCGCCGCA GGCATGATCT TCAAGCTGCC GGAGCGGTCG
AAGGAAATGG CCGCCGCAGA GCAGGCGGAA GGCCCCGAAG CTCTCCCGAT CCGCGGCCTG
TCCGGCAATG CCGAGGTCCA CTTCAGTCCT GCCGGCGCCG TTCCCGGAGA TCGCATCGTC
GGTATTATGG ACAAGGACAA AGGCATCACC ATCTATCCGA TCCAGTCGCC GATCCTGCAG
CAGTTCGACG AGCAGCCCGA GCGCTGGATC GACGTTCGTT GGGATCTCGA CGAGGCGAAC
AACAGCCGTT TCATTGCCAG AATTGCGGTC AGCGCCTTGA ACGAGCCGGG TACGCTGGCG
GAGGTCGCAC AGGCGATCGC GACCACCGAT GTCAACATCC GCTCCCTATC GATGGGGCGC
GTCGCGGCTG ATTTCAGCGA ATTGCAGTTC GACCTCGAAG TCTGGGATCT GCGTCAGCTC
AATCACCTGA TGGCGCAACT CAAGGAATTG CCAAGCATTT CCATGGTCAA GCGCCTCTTC
GAGTAG
 
Protein sequence
MMRQYELVER VQKYKPDVNE ALLNKAYVYA MQKHGQQKRA SGDPYISHPL EVAAILTEMH 
LDESTIAVAL LHDTIEDTTA TRQEIDGLFG EDIGALVEGL TKIKKLDLVT KKAKQAENLR
KLLLAISDDV RVLLVKLADR LHNMRTLDHM SAEKRARISE ETMDIYAPLA GRMGMQDMRE
ELENLSFRHI NPEAYETVTR RLQELSERNE GLIKKIEEEL SELLQAEGLA DAQVKGRQKK
PYSVFRKMQS KSLSFEQLSD VWGFRIIVSD IPACYRALGI VHTRWRVVPG RFKDYISTPK
QNDYQSIHTT IIGPSRQRIE LQIRTKRMHE IAEYGIAAHA LYKDRDTVSG DLTRTPTSNA
YSWLRRTIES LAEGDNPEEF LEHTKLELFQ DQVFCFTPKG QLIALPRGAT PIDFAYAVHT
NIGDTCVGAK INGRIMPLVT RLNNGDEVEI IRSGIQVPPP AWEEIVVTGK ARAAIRRATR
AAIRKQYAGL GYRILERTFE RAGKTFSREA LKPVLHRLGQ KDVEDAIAAV GRGELSSLDV
LRAVFPDHQD ERVTVKPSAD DGWFNMRSAA GMIFKLPERS KEMAAAEQAE GPEALPIRGL
SGNAEVHFSP AGAVPGDRIV GIMDKDKGIT IYPIQSPILQ QFDEQPERWI DVRWDLDEAN
NSRFIARIAV SALNEPGTLA EVAQAIATTD VNIRSLSMGR VAADFSELQF DLEVWDLRQL
NHLMAQLKEL PSISMVKRLF E