| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_0574 |
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| Symbol | |
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| ID | 5321410 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009636 |
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| Strand | + |
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| Start bp | 622989 |
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| End bp | 625307 |
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| Gene Length | 2319 bp |
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| Protein Length | 772 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640789510 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) |
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| Protein accession | YP_001326265 |
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| Protein GI | 150395798 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.122166 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGGCAGACA AGACGTCCCG CAGCATCCGT TATGCCGACC TGAACGCGGG CGACAATGCG
GAAACGCGCC GGCTGATCGA TGCCGGCAAT CGCCTCGCCG ACGAAGTCGC ACGCCTGTTT
CCGTCTCAGC CGGATATTGC CGACCGCCAC TATTGGCTCG AGGCGATGAT CAACCACGTC
CCGGACTACA TCTATGCCAA GGACACGGAG GGCCGTTTCC TGATCGCCAA TGAGGTGACG
GTCGCCGACA ATGGCCTCGA AAGCCTGCAG GATCTCGTCG GCAAGACCGA TTTCGATCTG
CATCCGCATG AATTTGCCCA GGCGGTCGCT GGTACGGAGC GGCGTGTGCT GGAGACCGGC
GAACCGATTT TTGGTATCGA GGAACGTGCG ATCGTCACGA AGGGCCGCGA CCGTTGGCTC
ATGACCTCGA AAGTGCCCTT GCGGAGCAAG AGCGGAAAGA TCATCGGCAT CGTCGGCATC
TCGCGTGACA TCACCGATCG GAAGTCGGCG GAGCGCCTGC TCGAAGGGCA GGCCCGGTTA
TTGGAAATGA TAGCCAAGGG CAAGCCGCTG ACCGAATTCT TCAACGAGCT GGTGCTGCTG
ATCGAGGCAC TTCTTCCCGG TATCAAAGGC TCTATCCTGC TTTTGTCCGA AGACGGCCGG
CATCTCCTGC ACGGCGCTGC TCCCAGCCTC GACCGGGCGT ATAGCGCTGC TGTTCATGCG
TTGGAAATAG GCCCGAATGC GGGCTCTTGC GGAACGGCCG CCTGGCGCGG CGAACAGGTC
ATCGTCTCCG ATGTCTACGC CGACCCGCTC TGGGCGGACT ACGCTCTTCT CCTGAAATCT
TCCGGTCTCC GTTCCTGCTG GTCCACGCCC ATCCTGTCGC GCGAGCGCAA GGTGCTCGGC
ACATTCGCGC TCTACGCACA TGAGGTCGCA ACCCCTTGCG AGCAGGAGCA GGAACTGATT
GCCATGGCCG CTCACCTCGC CGGAATCGCC ATCGAGCGCA AGCGGGCGGA GGACCGTATC
AGTTTCTTGG CCCACCATGA CGCCTTGACG GGCCTGCCGA ACCGCGTCCT TTTTGAAGAG
CAGGTCGACG GCATGCTCGA GGAGATCCGC GAGCGGGACC AATGCGCCGT GCTCGCCTTT
CTCGACCTCG ACAATTTCAA ACTGATCAAC GACAGCCTTG GCCACGCGGC AGGTGATGAG
CTCCTGAAAG CCGTCGCAGG GCGCATGCGG GCCTCCGTGC GGAAAGCCGA TTTTGTCGTG
CGCGTCGGCG GCGACGAGTT CATCATTCTC CTGAACGGGT TGCCGAAGGA GCGGGATATC
GTGCTGTCGC GGCTTGAGGA CATCCGCTCT GCAATCGCCA TGCCGCTGCA GTTGCAGGGC
CGCTCCCTGC AGGTCAGCTG CAGCATGGGA GTGGCTTGCT TCCCCAACCA GGGAAGAACG
GCGGGTGAAC TGCTCGCCAA CGCCGACATG GCCATGTACC GCGCCAAGGA ACTCGGCCGC
GACAACATAC AGGTCTTTAC CGAGGAGATG GCGGCAAGAG CTCATGAAAG ACTCCAATGG
CAGGAGGAGC TTCGTGAGGC ACTTGCGGGG GAGGAGTTCC TGCTGCATTT CCAGCCGCAG
ATGAATCTCG GCACCGGGCG CATCTTCGCG GCGGAGGCAC TGTTGCGTTG GAACCACCCG
GTGCGCGGCA TCATCTCGCC TTCGGTGTTC ATCCCGCTCG CCGAGGAGAC CGGGCTTATC
GTGCCGATCG GAGACTGGGC GCTGCGTGCC GCCTGTCGCC AGCTGAAGGC CTGGCAGGAT
GCCGGCCTGC CACCGCTGAT CATCAGCGTC AATGTTTCCG CTCGGCAGTT CCGCGAACGC
AACTGGGCAT CGCGGGTGGC GGAAATTCTG AAGGAGACCG GGCTCGAGGC CCGTTACCTC
GAGCTCGAGC TCACCGAGAG TCTCATCATG CAGGACGTGC CGGGGGCAAT CGCCACAATG
CACGCGCTGG AAGCGATCGG CGTTCACCTT GCGATCGATG ATTTCGGGAC GGGCTATTCC
AGCCTCAGTG CGCTTAAGCG CTTTCCGGTA CGCCGTCTGA AAATCGACCG GTCCTTCGTT
ACGGACATTC CGCTCGATGC CGACGACATG GCGATCACGT CCGCCATTAT CTCGCTTGCA
CAGAAGCTCG GCCTGCGTGT GATCGCCGAG GGTGTCGAGA GCGAGGCGCA GGTCGAGTTT
CTCCAGAAGG CCGGCTGCGA CGAAATCCAA GGCTATTTCT TCAGCCGTCC TTTGTCGGCC
GAGGCTTTCG AAAGCCTGCT TTCCTCCGCG CGGCCGTAA
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| Protein sequence | MADKTSRSIR YADLNAGDNA ETRRLIDAGN RLADEVARLF PSQPDIADRH YWLEAMINHV
PDYIYAKDTE GRFLIANEVT VADNGLESLQ DLVGKTDFDL HPHEFAQAVA GTERRVLETG
EPIFGIEERA IVTKGRDRWL MTSKVPLRSK SGKIIGIVGI SRDITDRKSA ERLLEGQARL
LEMIAKGKPL TEFFNELVLL IEALLPGIKG SILLLSEDGR HLLHGAAPSL DRAYSAAVHA
LEIGPNAGSC GTAAWRGEQV IVSDVYADPL WADYALLLKS SGLRSCWSTP ILSRERKVLG
TFALYAHEVA TPCEQEQELI AMAAHLAGIA IERKRAEDRI SFLAHHDALT GLPNRVLFEE
QVDGMLEEIR ERDQCAVLAF LDLDNFKLIN DSLGHAAGDE LLKAVAGRMR ASVRKADFVV
RVGGDEFIIL LNGLPKERDI VLSRLEDIRS AIAMPLQLQG RSLQVSCSMG VACFPNQGRT
AGELLANADM AMYRAKELGR DNIQVFTEEM AARAHERLQW QEELREALAG EEFLLHFQPQ
MNLGTGRIFA AEALLRWNHP VRGIISPSVF IPLAEETGLI VPIGDWALRA ACRQLKAWQD
AGLPPLIISV NVSARQFRER NWASRVAEIL KETGLEARYL ELELTESLIM QDVPGAIATM
HALEAIGVHL AIDDFGTGYS SLSALKRFPV RRLKIDRSFV TDIPLDADDM AITSAIISLA
QKLGLRVIAE GVESEAQVEF LQKAGCDEIQ GYFFSRPLSA EAFESLLSSA RP
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