| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_0553 |
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| Symbol | |
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| ID | 5321388 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009636 |
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| Strand | + |
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| Start bp | 599990 |
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| End bp | 602614 |
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| Gene Length | 2625 bp |
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| Protein Length | 874 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640789488 |
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| Product | MscS mechanosensitive ion channel |
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| Protein accession | YP_001326244 |
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| Protein GI | 150395777 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3264] Small-conductance mechanosensitive channel |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 0.362584 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGAGCA TGCGGATCCC CCATCGTCGC ACGATTGCGG CGGGCCCGGC CTTCGAAAGA
GCTTTGGACC AGGTCCGTTG CCCCAGCACA TGGCTTCGAT GGTTATTCCT CGCGTTCTTT
CTGGCATTTT CATCAGTAAC TTTTGCCCAG GACGCAACAA AACCGGAAGC CGGCGCGCCA
ACCGAAGCCC AGGAAAAGAC CCGGGCGGAT GCGGTGCCCG AAGTGCCACC GCAAGCTTTT
CCGGAGCAGC AGGCGCGTAT CGATGCGTGG CAGGCGACAC TGGAGCGCGT GGAGCGCGCC
CTTCAGGCCG AGAGCATTGA CGAGGCCACC CTGTCCGAAC TGCGCAGCCA GCTCGCCAAG
ATCCCCGTGC AGGCTGCCGG GCTCAAGGTG AGCCTTCAGC CACGGCTGCA GGTGGTCAAC
CAACGCATCG ATCAGTTGAA GCCGGCCGAT GAGCAGGCTG CCCGAAATCA GACCGAAGCG
ATCAAGCTCG AGCAGGCGCA GCTGCAATCA GAGGCGGCCG GGCTGCAGGG GGTCGTGCAG
CAGGCGGATC TCATCGCTCT TCGCGCGCAG CAGGATATCG ATGCTATCGG TGAACGGCGG
CGCGCCCTCT TTACAAGCTC CATCCTGCAG CGATCGCAAA GCCTTGCCGA TCCATCCTTT
TGGCTCGAAC TGGCCGCCGC GACTCCGGAG ACGCTCGCAA ATCAGTCCCG CGTCGTCGGG
CATTGGTTCG GCGTCCTGGT GGAGCGCACC GGCCGTTCGG CCGCCGGCAT TCTCGTCGTT
GTCGTCGGCT TCGCCGCCTT TCTCCTTTCA CCGGGCCGAC GCTGGCTGTC CAGGCGCACG
AGCCGCGATC CTTCGGTGCT CTACCCGTCC AGGCTCGCCA AGGCGACCGC GGCAGCAGCC
ATCACACTTG CCAACCTCCT GATCCCGGCA ATCGCCTTCT TCATGCTTTA TCAGGCGATG
TCCATTCTGA GGGTCCTTCC TGTCGATCTG GCGACGGTCC TCAGACCGGT TTTTTTCGGC
TTGACCTTCG CATCCTTTTT TTACGGCCTT TCAATTGCTG TGCTCGCGCC CGAACGGCCG
AGCTGGCGGC TCGTCGATAT TACCGATGCG GCAGCCGAGC GGCTGCTCCC CGTCATCGTC
GCGATGGCAG TGGTCAATGC CGGCGGCCTT GCCCTCGATG CCTTCCTGAA AGCTACCTAT
GCGCCCTTGT CCTTTGCCGT TGCGGCACAA GGCCTCGGCG CCATCACGCT CGGCATTCTC
GCCATGGTGG CGCTCAGATT CGTGGCCCGC GAGGAAAACG ACGAGGATAC GCAGAGAACG
AGTTCGGCCT GGCGCCTGCT CATTCCGGTG ACCTGGGCGG TCGCGGCGCT GACCGTCGTT
GCGCCACTCG CCGGCTTTGT AGCCTTTGGC CGCTTTGCCG CGCTGCAGAT CGTCTTCACG
ACGGCGGTGC TGATGAGCGT GGTGCTTATG CTGCGCCTGG CGGATGAGGC GATTTCATAC
GGGTTTTCCG TCCAGACGCG GATCGGCGGC TTCATGCGGC AGGCGATCGG CCTCAAGACC
AACACGATAA GCCAGATCGG CGTGATTCTC GCAGGTTTCG CGCGGCTGGT CGTGTTGATG
ATTGCCGTAA TGGCTCTTCT CGCGCCGTGG GGCATCCAGT CGGAGGACCT GGTCGGCACC
TTCACTTCCG CCTTTTTCGG TTTCGAGATC GCCGGCTTTT CCTTCTCGCC ATCCGCCATT
CTCGGCGCTA TCGTCGTCTT CATCATCGTA ATCGTCGCCA CGCGCGGCTT CCAGAGATGG
CTCGACGGCC GGCTCCTGCC GCAAACGAGC CTCGACACAG GACTGAGGAC GTCGATCCAC
ACCGGGGTCG GCTATATCGG GGCGGCGATC GCCGGGCTAG TGGCTTTCTC CTATGCGGGC
TTGAACCTTC AGAACGTCGC CATCGTTGCA AGCGCACTGT CCGTGGGTAT CGGTTTCGGC
CTTCAGTCCA TCGTCAACAA TTTCGTTTCG GGTATCATTC TCCTCGCCGA ACGGCCCTTC
AAAGTCGGCG ATCGCATCGA GGTCGGCCAG AACATGGGGA TCGTCCAGCG CGTCAGCGTC
AGGGCGACCC AGATCCAGAC CTTCGACAAT GTGACGGTGA TCGTACCCAA TGCCGATCTT
ATCAGCGGCC AGGTGGTCAA CTGGATGCAT GGCGACTTCT CAGCGCGCCT GAAGATTCCC
GTGGGGGTCT CCTATGATTC GGACCCGGAG CAGGTAAAAC GGGTGTTGCT GGAGATCGCA
AAGGACAATC CACGCGTCCT GCAAATTCCG GAGCCGTTCG TTTCCTTCAC CGATTTCGGA
GCCGACGCCC TGCAGTTCAC CTTGTTCTGC CACGTCGGCA ACATCAACGC CGATGCGGGC
GCGGCGAGCG ATATGCGTTT CGAGATAGCG AAACGCTTTC GGGAGGAAAA AATCGAGATG
CCCTTCGGCC AGCGCGACAT CCATCTTCGC GACCTGGCGA GCATAGAAGG ATTGGTCCGC
GACCTGGTCG GCGCCCGCGC TGCCGCCCCG GCGACCGCTC CTTCTCCCGC GGCAAAAGCC
GGTGCGAAGC GTAAGAAAAG CCCGGCGGAT GCCGCAGACG AATGA
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| Protein sequence | MTSMRIPHRR TIAAGPAFER ALDQVRCPST WLRWLFLAFF LAFSSVTFAQ DATKPEAGAP
TEAQEKTRAD AVPEVPPQAF PEQQARIDAW QATLERVERA LQAESIDEAT LSELRSQLAK
IPVQAAGLKV SLQPRLQVVN QRIDQLKPAD EQAARNQTEA IKLEQAQLQS EAAGLQGVVQ
QADLIALRAQ QDIDAIGERR RALFTSSILQ RSQSLADPSF WLELAAATPE TLANQSRVVG
HWFGVLVERT GRSAAGILVV VVGFAAFLLS PGRRWLSRRT SRDPSVLYPS RLAKATAAAA
ITLANLLIPA IAFFMLYQAM SILRVLPVDL ATVLRPVFFG LTFASFFYGL SIAVLAPERP
SWRLVDITDA AAERLLPVIV AMAVVNAGGL ALDAFLKATY APLSFAVAAQ GLGAITLGIL
AMVALRFVAR EENDEDTQRT SSAWRLLIPV TWAVAALTVV APLAGFVAFG RFAALQIVFT
TAVLMSVVLM LRLADEAISY GFSVQTRIGG FMRQAIGLKT NTISQIGVIL AGFARLVVLM
IAVMALLAPW GIQSEDLVGT FTSAFFGFEI AGFSFSPSAI LGAIVVFIIV IVATRGFQRW
LDGRLLPQTS LDTGLRTSIH TGVGYIGAAI AGLVAFSYAG LNLQNVAIVA SALSVGIGFG
LQSIVNNFVS GIILLAERPF KVGDRIEVGQ NMGIVQRVSV RATQIQTFDN VTVIVPNADL
ISGQVVNWMH GDFSARLKIP VGVSYDSDPE QVKRVLLEIA KDNPRVLQIP EPFVSFTDFG
ADALQFTLFC HVGNINADAG AASDMRFEIA KRFREEKIEM PFGQRDIHLR DLASIEGLVR
DLVGARAAAP ATAPSPAAKA GAKRKKSPAD AADE
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