| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_0533 |
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| Symbol | |
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| ID | 5321367 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009636 |
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| Strand | - |
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| Start bp | 573936 |
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| End bp | 576848 |
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| Gene Length | 2913 bp |
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| Protein Length | 970 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640789467 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_001326224 |
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| Protein GI | 150395757 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 0.935916 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCCCTGC CACGTAAGCC GCACGCTTGG CCAGCCACAT GGTTGACGGC GATTCTGGTC
GCACTCGTCG TTTTCGCCCT TGGCTTTGGC GGCGGCGTTG CGCATGCGCT CGAGCCGGTG
AAGATCTCGC GCGAAGACAC GGCGCTCGAC CTTACCGCAA CGACGGAGAT CTATAGCGGC
CGGGGCGACG CATTCCAGGT TTCGACCGCC CCGGGCACTG ACGGCATCGT CCGGCGCATC
GAAGTGCGTT CCAGCACCGA GAGCCATCAG GGAGACTGGG CCGTATTCGC GCTCGCCAAC
GTTTCGGAAG AGCAGCTCGA ACGCGTGATC GTGGCGCCGC ATTTCCGCCT CGTGAATTCG
AAGCTCTTCT GGCCCGACCT CGGGTCGCAG CGCATTCTTT CGATCACGCC GAGCGAGGGT
TTCGCGCTTG ACCGGCAACC GAGCGAAGAG GCGGACGTCT TCCGCATCAC GCTCAATCCG
GGCGCGGTGA TCACCTTCGT TGCCGAACTC ACGACGCCGG AGCTGCCGCA GATCTATCTT
TGGCAACCGG ACGCCTACAA GGACACCGTC AACGCTTTCA CGCTTTATCG CGGTATCGTG
CTCGGGATCG CCGGCCTGCT GGCGGTTTTC CTGACAATCC TGTTCGTCGT CAAGGGCACG
TCGATGCTGC CGGCGACGGC AGCTCTCGCC TGGGCAGTGC TCGCCTATAT CTGTGTCGAT
TTCGGCTTCC TTTCGAAGCT CATCACCGTG ACTGCGGATG ACGAGCGCAT ATGGCGTGCA
GGAACGGAAG TGTTTCTTGC GGCCGGGCTC GTCGTCTTTC TTTTCACCTA TCTCAATCTC
AATCGCTGGC ATCAGCATCT CGGTTATGCG ACGCTTGCCT GGATTCTCGG CCTCGGGCTG
CTCTTTGGCG TTGCCGTCTA CGATCCGGCA ATCGCCTCCG GCATCGCCCG CCTGTCCTTC
GCGCTGACGG CCACCGTCGG GATCCTGCTG ATCGCCTATC TCGGCTTCAA CCGCTACGAC
CGTGCGATTC TCCTTGTTCC CGCCTGGCTG CTGATCCTCG TCTGGCTGTT CGGCGCCTGG
CTTGCCGTAA CCGGCCAGCT TGCCAACGAC ATCGTGCAAC CGGCGCTCGG CGGCGGGCTC
GTTCTGATCG TCCTATTGAT CGGCTTCACG GTCATGCAGC ACGCCTTTGC CGGCGGAGCC
TATCAGCAGG GTCTGTTCTC CGATCTTGAA CGTCAGGCGC TGGCGCTCAC CGGCTCGGGG
GACACGGTCT GGGATTGGGA CGTGGCACGC GACCGTGTGG TCACCATTCC CGATATCTCG
CACCAGCTCG GGCTTTCGCT GGGGACGATG AACGGGCCGG TACGCAACTG GTTGCCACGG
TTGCACCCGG ATGACCGCGA TCGTTTCCGG GCAACGCTTG ACGTGCTGCT CGAACATCGC
CGCGGCCGGC TCAACCATGA GTTCCGCGTT CGCGCCGAGG ACGGCCATTA TCATTGGCTC
TCCATCCGGG CGCGCCCGGT GCTCGGGGCC AACGGCGAAA TCATCCGTTG CGTCGGCACC
ATCATCGACA TTACCGAACA GCGCAATTCC GTCGAGCGGC TCTTGCACAA CGCGCTTCTG
GACAATCTGA CGGGTCTGCC TAACAGGCAG GTCTTCCTCG ACCGGCTGCA GGCTATCCTT
CTTATGGGCG ACGGCAGCAG CCCGATACGG CCGACCGTGC TTGCCATCGA CATCGACCGT
TACAAACAGG TCAACGACAT GTTGGGAATT GCGGCCGGCG ACAATATCCT CATCGCGCTC
ACGCGTCGGC TGCGTCGCCT TCTACGTCCG CAGGACACGC TCGCGCGTCT CGGCGGCGAC
CAGTTCGGAC TGATCCTCAT GTCCGAGCGC GATCCGGCCA AAATCGCCGA CTTCGCCGAT
GCGATCAGCA AGGCAATCAT GGTTCCGCTC AATTACGGCA ATCGTGAGAT CAACCTGACC
GCTTCGATCG GCCTGGTCGC CTGGCTCGAT CAGGAACAGA GCGCTGCCGG ACTGCTCGAC
GATGCCGAGC TTGCGATGTT CCGCGCCAAG AAGGCAGGCG GCAACCGCGT CGAGCCGTTC
AGGCCGGCTT TCCGGACCTC CGGCTCCGAC CGTCTGCAGC TCGAAACAGA CTTGAAGCGC
GCCATGGAGC GCAAGGAGCT TTCCCTCGTT TACCAACCGA TCGTCCGACT CAGCGACGCC
GAGATCGCCG GCTTCGAGGC ACTCATGCGT TGGGAACATC CCAAGCGCGG CAATATTTCG
CCGACCGAAT TCATCCCAAT TGCCGAAAAT TCCGAGCTGA TAAGCCACCT CGGCCTGTTC
GCCTTCGACA AGGCAACAAG CGATCTCGCC GAATGGCAGA CTCAGACCGG TGACCTGCCG
ATCTTCGTCT CCATCAATCT GTCGAGCGCA CAGCTTCTGA ACAACGAGCT CTATGACGAC
ATGCGTGCGA TTCTCAGCAA GAGCCGCTGC GACCCGTCCC AGATCAAGAT GGAGCTGACG
GAATCGCTTG TCATGGAAAA CCCCGAACAG GCCAGGCTTG TGCTCGAAAA GCTTCGGGAA
GCCGGGCTGC GGCTGGCCCT CGACGACTTC GGCACCGGCC ACTCGTCGCT CTCCTATCTC
ACCCGCTTCC CATTCGACAC GATCAAGATC GACAAGGCGC TGGTCCGCGA TCCAAGCGAC
AAGCGCGCCG TCATCCTGCG TTCGGTGATC ACGATGGCGC GCGAGCTCGA CATGCGGGTG
GTCGCGGAGG GGATCGAATC CGAAGAGGAT GCGATCCAGC TCGCGCAGAT GGGTTGCGAT
TACGGTCAGA GTTTCCTGTT CGGTCCGCCG GTCGGATCGG AATCTATTCT CAGGCTCTTG
AAGGAGCGGT TTCCTCTGAT GAAGCGGGCT TAA
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| Protein sequence | MPLPRKPHAW PATWLTAILV ALVVFALGFG GGVAHALEPV KISREDTALD LTATTEIYSG
RGDAFQVSTA PGTDGIVRRI EVRSSTESHQ GDWAVFALAN VSEEQLERVI VAPHFRLVNS
KLFWPDLGSQ RILSITPSEG FALDRQPSEE ADVFRITLNP GAVITFVAEL TTPELPQIYL
WQPDAYKDTV NAFTLYRGIV LGIAGLLAVF LTILFVVKGT SMLPATAALA WAVLAYICVD
FGFLSKLITV TADDERIWRA GTEVFLAAGL VVFLFTYLNL NRWHQHLGYA TLAWILGLGL
LFGVAVYDPA IASGIARLSF ALTATVGILL IAYLGFNRYD RAILLVPAWL LILVWLFGAW
LAVTGQLAND IVQPALGGGL VLIVLLIGFT VMQHAFAGGA YQQGLFSDLE RQALALTGSG
DTVWDWDVAR DRVVTIPDIS HQLGLSLGTM NGPVRNWLPR LHPDDRDRFR ATLDVLLEHR
RGRLNHEFRV RAEDGHYHWL SIRARPVLGA NGEIIRCVGT IIDITEQRNS VERLLHNALL
DNLTGLPNRQ VFLDRLQAIL LMGDGSSPIR PTVLAIDIDR YKQVNDMLGI AAGDNILIAL
TRRLRRLLRP QDTLARLGGD QFGLILMSER DPAKIADFAD AISKAIMVPL NYGNREINLT
ASIGLVAWLD QEQSAAGLLD DAELAMFRAK KAGGNRVEPF RPAFRTSGSD RLQLETDLKR
AMERKELSLV YQPIVRLSDA EIAGFEALMR WEHPKRGNIS PTEFIPIAEN SELISHLGLF
AFDKATSDLA EWQTQTGDLP IFVSINLSSA QLLNNELYDD MRAILSKSRC DPSQIKMELT
ESLVMENPEQ ARLVLEKLRE AGLRLALDDF GTGHSSLSYL TRFPFDTIKI DKALVRDPSD
KRAVILRSVI TMARELDMRV VAEGIESEED AIQLAQMGCD YGQSFLFGPP VGSESILRLL
KERFPLMKRA
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