| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_0527 |
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| Symbol | ispH |
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| ID | 5321361 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009636 |
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| Strand | + |
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| Start bp | 568944 |
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| End bp | 569954 |
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| Gene Length | 1011 bp |
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| Protein Length | 336 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640789461 |
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| Product | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase |
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| Protein accession | YP_001326218 |
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| Protein GI | 150395751 |
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| COG category | [I] Lipid transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0761] Penicillin tolerance protein |
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| TIGRFAM ID | [TIGR00216] (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming) |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.49504 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGATGGCCT CATCCGTAGC AAAAACCCCG ATCACCATCC GCCTCTGCGG GCCGCGTGGC
TTCTGCGCGG GCGTCGACCG GGCGATCCAG ATCGTGGTGC TTGCGCTCAA GGAGTTCGGC
GCGCCGGTCT ATGTCCGTCA TGAGATCGTG CACAATCGCT ATGTCGTGGA AGGTCTTGAA
GCCAAGGGTG CGATTTTCGT CGAGGAGCTC GACGAGATTC CACCCGAGCA TCGCAAGCAG
CCCGTCGTCT TCTCCGCCCA CGGCGTGCCG AAATCCGTCC CCGCGGATGC GGATGCGCGC
AATCTCTTCT ATCTCGATGC CACATGCCCG CTCGTCTCGA AGGTGCACAA ACAGGCTATG
CGCCATCACC GTATGGGGCG CCATGTGGTG CTGATCGGCC ATGCCGGCCA TCCCGAGGTT
ATCGGCACCA TGGGGCAACT GCCGGAGGGG ACGGTCTCCC TCATCGAGAC TGTCGAGGAT
GTCGACGTTT ATACGCCCCC GGATCCGGAC AATCTCGGCT TTGTTACGCA GACGACGCTC
TCGGTGGATG ATACCGCCGG CGTCATCAAG CGGCTCCATG AGCGCTTTCC GAACCTGACT
GCGCCTGCCG CCGACTCGAT CTGCTACGCC ACCACGAACC GGCAGGAAGC GGTGAAGCAG
GCTGCACCCG GCTGCGATCT TTTCCTCGTC GTCGGCGCCC CCAATTCTTC GAACTCGAAG
CGCCTGGTGG AAGTAGCGCT GAGGGCCGGG GCAAAGAAAG CCGTTCTGGT TCAGCGGGCT
TCTGAAATTG ACTGGGCGAC GATCGGGGAA ATCTCGACCG TCGGGTTGTC CGCCGGTGCC
TCGGCGCCGG AGGTGATCGT CAATGAGATC ATCGAAGCCT TCCGCGAGCG CTACGACGCC
GCGGTCGAGC TTGCCGACAC GGTGGAGGAG AACGAGCACT TCCTCGTCAA CCGCGAGCTC
AGGCATGTCG AACTGACCGG CGCCGACATG GCTTTCGTCA ATGGTGAATA G
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| Protein sequence | MMASSVAKTP ITIRLCGPRG FCAGVDRAIQ IVVLALKEFG APVYVRHEIV HNRYVVEGLE
AKGAIFVEEL DEIPPEHRKQ PVVFSAHGVP KSVPADADAR NLFYLDATCP LVSKVHKQAM
RHHRMGRHVV LIGHAGHPEV IGTMGQLPEG TVSLIETVED VDVYTPPDPD NLGFVTQTTL
SVDDTAGVIK RLHERFPNLT APAADSICYA TTNRQEAVKQ AAPGCDLFLV VGAPNSSNSK
RLVEVALRAG AKKAVLVQRA SEIDWATIGE ISTVGLSAGA SAPEVIVNEI IEAFRERYDA
AVELADTVEE NEHFLVNREL RHVELTGADM AFVNGE
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