| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_0520 |
|---|
| Symbol | |
|---|
| ID | 5321354 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009636 |
|---|
| Strand | + |
|---|
| Start bp | 564498 |
|---|
| End bp | 565448 |
|---|
| Gene Length | 951 bp |
|---|
| Protein Length | 316 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 640789454 |
|---|
| Product | protoheme IX farnesyltransferase |
|---|
| Protein accession | YP_001326211 |
|---|
| Protein GI | 150395744 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0109] Polyprenyltransferase (cytochrome oxidase assembly factor) |
|---|
| TIGRFAM ID | [TIGR01473] protoheme IX farnesyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGGTCA TCGACAATCA CGAGGCAGTC GGCATGGAAG GCGCACCACG CCTGTCCGAG
GCCTCTGCGC GCGATTATTT CGAACTCCTG AAGCCGCGCG TCATGTCTCT CGTCGTCTTC
ACCGCCTTCG CGGGGCTCAT CCTTGCTCCC GGGCATATCA ATCCGTTCAT CGGATTCACA
GCGATTCTCT GTATCGCCAT AGGAGCCGGC GCCTCGGGTG CGCTGAACAT GTGGTACGAT
GCGGATATCG ACGCGGTCAT GAGCCGCACG GCCAAGCGCC CAATTCCGGC CGGAAAGATT
TTGCCCCAGG AAGCGCTTGC CTTCGGCCTG ACGCTCTCGG CCTTCTCGGT GATCATCCTC
GGGCTCGCCG TGCACTGGCT CGCAGCCGGG CTGCTCGCCT TTACGATTTT CTTCTACGTG
GCTGTATACA CGATGTGGCT GAAGCGCTCG ACGCCGCAGA ACATCGTTAT CGGCGGAGCT
GCCGGGGCCT TTCCTCCGAT GATAGGCTGG GCCTGCGTGA CCGGCGGCAT ATCGGTCGAG
AGCATCGTGC TCTTCCTCAT CATCTTCCTC TGGACGCCGG CGCATTTCTG GGCCCTGGCC
CTTTTCAAGA TGGGCGAATA CGGCGCCGTC GGAGTGCCTA TGATGCCGAA TGTCTGCGGC
GAGGCGACGA CCAAGCGGCA AATCGTCATC TATGCCGTGC TCACTGCGAT CAGCGGTATC
TGTCCCACCT TGCTCGGCTT CGCGAGCCTT GGTTATGGAG CCCTTGCGAC GGCCTTGGGG
CTTGGGTTCG TCGGGTATTC GCTGGGCGTG CTGCGCATGC CTGAAGGCGA CAAGCGAATG
GTGCCGGCGA AGAAGCTTTT CGCCTTCTCC ATCGTGTATC TTTTCGCGAT TTTCTCGGCG
CTCCTGGTTG ATTACGCAAT CGCCCGGATC TGGTTCGGAG GCGTCATCTG A
|
|---|
| Protein sequence | MTVIDNHEAV GMEGAPRLSE ASARDYFELL KPRVMSLVVF TAFAGLILAP GHINPFIGFT
AILCIAIGAG ASGALNMWYD ADIDAVMSRT AKRPIPAGKI LPQEALAFGL TLSAFSVIIL
GLAVHWLAAG LLAFTIFFYV AVYTMWLKRS TPQNIVIGGA AGAFPPMIGW ACVTGGISVE
SIVLFLIIFL WTPAHFWALA LFKMGEYGAV GVPMMPNVCG EATTKRQIVI YAVLTAISGI
CPTLLGFASL GYGALATALG LGFVGYSLGV LRMPEGDKRM VPAKKLFAFS IVYLFAIFSA
LLVDYAIARI WFGGVI
|
|---|
| |