| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_0457 |
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| Symbol | |
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| ID | 5321291 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009636 |
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| Strand | - |
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| Start bp | 493538 |
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| End bp | 495361 |
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| Gene Length | 1824 bp |
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| Protein Length | 607 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 640789392 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_001326149 |
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| Protein GI | 150395682 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4785] Lipoprotein NlpI, contains TPR repeats |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 0.559359 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGGCAGA ATACATTCCT TCGCCTCCTC AGCGGCGCGG CAATGCTGGT TCTTGCGACG
GTGGCCGGCA ACCTGCAGGC CTTTGCCGAG GAGAAGGCGC CGGTCGAAGA CGCCGAACCT
TTCGACATCA AGAGCGTCAA CACCTTTGCC GGTGCCTTCC TTGCGGCGCG CACGGCCGAC
GTGGACCGCG ACTTCGCGGC GGCAACCGAC CTATATCGCA CTGCACTGAG GTTCGAGCCG
GGCAACACCG AGGTGAAGCA GCGGCTGATG ATCACGCTGT TGATGAGCGG CAGGTTCGAT
GAAGGCGCCA AGATCGCCGA AGAGCTGAAA TCGGATCCTG CCGTTGAAAG GATCACCACG
GTGGTCCGAG CGATCGAAGC GATCCGTAAG CGCGAATACC GCAATGCGCA AAAGCTCTTG
AAGTACGAGG GGCCGAACGA CCTCGATCGG CTGATGAGCT CGCTGCTTTC CGCTTGGGCG
AAGTTCGGTC AGGGCCGACC GAAAGAGGCC CTGGCGCAGA TCAAAAATCT CCAGGGTCCG
GAATGGTTCC GGATCTTCAA GAACTATCAT GCCGGAGCGA TCGCGCTTGC GGCCGGCGAC
AAGGCAACCG CGCGGACCCG GCTGAACGAC GCCGTTCTCG ACCGCGAAGG CGGCGGCGCG
GCACCGGATA CCTTCATGCG GGCGGTGGAG GCGCTGGCGC GGTTCGAGGC ACGCGAAGGC
AACAAGCAGA AGGCGTTGGA TACGATCGCC GTCGGCGAAA ATCTCGTAAA CAACTACACC
CCGCTCGAGG CTCTCAGAAA GAGTGTCGAA GAAGGAAAGA CGCAGGAACA GCAGGTTCGC
AACGCCGTGC AGGGTGCCGC CGCCGTGCTC TTTTCCATCG GTGGTGCGCT CAACCGGGAG
GGGGCGGAAG ACATCGTTTC GCTTTACCTC CAAACGGCGC GGCGGCTTGA CCCGGAAAGC
GCCGATATTC TGGTGATGCT CGGCGGCATC GCCGAAAATC TGAAGAAGCC GGACGAGGCG
ATCGAGCTTT ACAAGAGCGT GCCGGAAAAC TCGCCGATGC GTCGCCTTTC CGAGCTGCAG
CTTGGCCTGA GTCTCGCGGG CATCGGAAAG GTCGAAGAGG CGAAGAAGCA CCTGAAAGGG
CTGATCGACG TCGATCCCAA GAATATCCGC AATTATCTCG CCTATGGCAG CGTGCTTTCC
GACGCCAAGG ACTACAAGGC CATGGGCGAG CTTTACGATC GGGCGGTCGA GGCGATCGGT
CCCGTTCCAA AGCGCAGCGA CTGGACCATC TTCTTCCAGC GCGGCATCGC CTATGAGCGG
CAGAAGCTTT GGGAGAAGGC CGAGCCGAGC TTCCTCAAGG CGCTGGAGCT CAACCCGGAT
CAGCCCCAGG TGCTCAACTA TCTCGGCTAC TCCTGGGTCG ATATGAACGT AAAGCTCGAA
GAGGGCCTCG ACATGATCCG CAAGGCGGTC GAACTCAAGC CCGACGACGG CTATATCGTC
GACTCGCTCG GCTGGGCGTA TTTCCGCATG GGCCGTTTCG ATGAGGCCGT GGCCGAACTC
GAGCGCGCGG CCGAGCTGAT GGCCGGCGAC GCGACGATCA ACGATCACCT TGGCGACGCC
TACTGGCGCG TCGGCCGGAA ACTCGAAGCG GTGTTCCAGT GGAATCAGGC GCTGGAGCTG
AAGCCTGAGG AGGCTGAAAT TCCCAAGATA AAGGCGAAGA TCGAAAATGG TCTGCCGCCG
TTGAAAGAGT CGGTTCCGGC CGCGGCGGAT GCCAAGGAAA AGCTTCCGAA AAAAACGGAG
CCGGCGCCGG ACAAGAAGTC CTGA
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| Protein sequence | MRQNTFLRLL SGAAMLVLAT VAGNLQAFAE EKAPVEDAEP FDIKSVNTFA GAFLAARTAD
VDRDFAAATD LYRTALRFEP GNTEVKQRLM ITLLMSGRFD EGAKIAEELK SDPAVERITT
VVRAIEAIRK REYRNAQKLL KYEGPNDLDR LMSSLLSAWA KFGQGRPKEA LAQIKNLQGP
EWFRIFKNYH AGAIALAAGD KATARTRLND AVLDREGGGA APDTFMRAVE ALARFEAREG
NKQKALDTIA VGENLVNNYT PLEALRKSVE EGKTQEQQVR NAVQGAAAVL FSIGGALNRE
GAEDIVSLYL QTARRLDPES ADILVMLGGI AENLKKPDEA IELYKSVPEN SPMRRLSELQ
LGLSLAGIGK VEEAKKHLKG LIDVDPKNIR NYLAYGSVLS DAKDYKAMGE LYDRAVEAIG
PVPKRSDWTI FFQRGIAYER QKLWEKAEPS FLKALELNPD QPQVLNYLGY SWVDMNVKLE
EGLDMIRKAV ELKPDDGYIV DSLGWAYFRM GRFDEAVAEL ERAAELMAGD ATINDHLGDA
YWRVGRKLEA VFQWNQALEL KPEEAEIPKI KAKIENGLPP LKESVPAAAD AKEKLPKKTE
PAPDKKS
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