| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_0416 |
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| Symbol | |
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| ID | 5321250 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009636 |
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| Strand | + |
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| Start bp | 448238 |
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| End bp | 449968 |
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| Gene Length | 1731 bp |
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| Protein Length | 576 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 640789351 |
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| Product | pseudouridine synthase |
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| Protein accession | YP_001326108 |
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| Protein GI | 150395641 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
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| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 0.561279 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACATCCA AAGACAAGCC CACGAGGCCC GGCGGCAAGG CCAAGGGTCG CGACACGAAA
CCTCATTCCG GCGGCGAGAA GGCTGCAGTG CGGGCAGCCG GTAGCGCGCC GGCCGCGTCG
GCTGCGGGTG CGGAACAGCC ACAGCGCATC TCGAAGATAC TCTCGCGCGC AGGCGTTGCA
TCGCGCCGCG ACGTCGAGCG GATGATCATG GAAGGGCGCG TCAGTCTCAA TGGCCTCGTG
CTCGACACAC CGGTGGTCAA CGCGACGCTC GCCGACAGGA TCGAAGTGGA CGGCCATCCG
ATCCGTGGCA TCGAACGGAC GCGGCTTTGG CTCTATCACA AGCCGGGCGG GCTCGTGACG
ACCAATGCCG ATCCGGAAGG CCGGCCGACG GTCTTCGAAA ACCTGCCCGA GGATCTGCCG
CGCGTTCTGT CGATCGGCCG GCTGGACATC AACACCGAAG GCCTGCTGCT CCTGACGAAT
GACGGCGGGC TTGCCCGCGT GCTTGAGCTG CCGTCGACAG GCTGGCTGCG CCGCTACCGC
GTGCGCGCAC ACGGGGAAAT CGATCAGGCG GCGCTCGACC GCCTGAAAGA GGGTATCGCG
GTCGAAGGTG TCCTTTACGG GGCGATCGAG GCTACTCTGG ATCGGGTACA GGGCTCGAAC
GTCTGGATCA CTATGGGCCT GCGCGAAGGC AAGAATCGTG AGATCAAGAA CGTCCTTGGC
GCACTTGGCC TCGACGTAAA CCGACTGATC CGCATCTCCT ATGGTCCGTT CCAGCTCGGC
GAGTTGCCGA TTGGTCAGGT TCAGGAGATT CGCGGCCGAA CGCTGCGCGA ACAGCTGGGC
CCCCGGCTGA TCGCCGACGC CAAAGCGAAT TTCGACGCGC CGATCTATAA CGACCAGTCG
ACTGCTGCCG AGCCTGAAGC AGAGCCTGTC GCCGATCACG GCAAGGCGGA ATGGGGCAGC
AAGCGCGAGA AGGCCGGAGA CAAGCGCGAG CGTGCTCTTG CCCGCCTCGA CACCCGCCGC
GACGATGGCC GACCGAACGA CCGAGGCCGC AGTCGTGGAA AGGCGGAGGA ACGTCCTGCT
CGCCCGCCTC TGAGACGCAA CCGCTCTTCC AACGTCTGGA TGGCGCCGGG TGCGCGTCCG
ACGGTCGAGA AAAAGCCGAA GGCTGCGGAA GACGAGCTTT CTCCGAAATC CACGCGGCGC
GCGCCGGCGG ACGTTAAACG CCGCGACCGT GCTAAGGACC CCGCCACGGC GAAGGCAGCC
GGCTTTGATG AGGAGCGTAA GGGCAAGGCG GGTAAATCCG CCGGCCGCAA GGACGCCGCC
GGTGGCTTCG AAAGGCGTCG CCCGCTCGAA GGCGCAGAGC GGAAATCACG CGACCATGGC
GATCGTCCGC CGCGCCGTCC GGAGGGGGAG CGGGCTGCAC GCGACCCGGC CGATGACCGC
GCGTCTTCCG GCGGCCGCAA GGAGACCGCT CGGCCACCGC GCGGCGACGG CAAGAAGCGC
TTTGCCGACG ACCGGCCACG GGCGAACGCT GGCGGCAAGC CGGCGGCGGC AAACCCCTCC
GCCAATCGCT CGTCCGAATC GCGCGCCGGA AAACCCGCAG GCACCAAACC CTCCGGCGGC
AGGCGGCCCG GTGGAGGCAA GCCCGGTAAT CGCCCGGGTG GCGGCAAACC CGGTAATCGC
CCTGGTGGCG GCAAATCCTC GGGCAAGGGA CCGCAGGGCA GGGGGAAGTA G
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| Protein sequence | MTSKDKPTRP GGKAKGRDTK PHSGGEKAAV RAAGSAPAAS AAGAEQPQRI SKILSRAGVA
SRRDVERMIM EGRVSLNGLV LDTPVVNATL ADRIEVDGHP IRGIERTRLW LYHKPGGLVT
TNADPEGRPT VFENLPEDLP RVLSIGRLDI NTEGLLLLTN DGGLARVLEL PSTGWLRRYR
VRAHGEIDQA ALDRLKEGIA VEGVLYGAIE ATLDRVQGSN VWITMGLREG KNREIKNVLG
ALGLDVNRLI RISYGPFQLG ELPIGQVQEI RGRTLREQLG PRLIADAKAN FDAPIYNDQS
TAAEPEAEPV ADHGKAEWGS KREKAGDKRE RALARLDTRR DDGRPNDRGR SRGKAEERPA
RPPLRRNRSS NVWMAPGARP TVEKKPKAAE DELSPKSTRR APADVKRRDR AKDPATAKAA
GFDEERKGKA GKSAGRKDAA GGFERRRPLE GAERKSRDHG DRPPRRPEGE RAARDPADDR
ASSGGRKETA RPPRGDGKKR FADDRPRANA GGKPAAANPS ANRSSESRAG KPAGTKPSGG
RRPGGGKPGN RPGGGKPGNR PGGGKSSGKG PQGRGK
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