Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smed_0310 |
Symbol | |
ID | 5321142 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sinorhizobium medicae WSM419 |
Kingdom | Bacteria |
Replicon accession | NC_009636 |
Strand | + |
Start bp | 334002 |
End bp | 335096 |
Gene Length | 1095 bp |
Protein Length | 364 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 640789245 |
Product | extracellular solute-binding protein |
Protein accession | YP_001326004 |
Protein GI | 150395537 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0687] Spermidine/putrescine-binding periplasmic protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 31 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCCAAAC TCATCGTCGC AACCCTGACT GCCGCGGTGC TTGCGGGATC GACCATGCTT GCCTCCGCGC AGGAGCGGGT TGTCAACGTT TACAACTGGT CGGACTATAT CGACGACAGC ATCCTTGCGG ATTTCACCAA GGAGACTGGT ATCAAGGTCG TCTATGACGT CTTCGACTCC AACGAGATTC TGGAAACCAA GCTGCTCGCC GGCGGTTCCG GCTACGACGT CGTCGTCCCG ACCGCTTATT TCCTACAGCG CCAGATTGCC GCCGGGGTGT TCCAAAAGCT CGACAAGTCG AAACTGCCGA ACCTCTCCAA CATGTGGGAC ATGGTCATGG AACGTACCGC CCAGTACGAT CCGGGCAACG AGTATGCCGT CGACTACATG TGGGGGACGA CTGGGATCGG CTATAATGTC GACAAGATGA AGGAAATTCT CGGCACCGAC GAGAAGCCGA ACTGGGATGT CATTTTCGAC CCGGAGATAT CGGCGAAGTT CAAGGACTGC GGCATTCATC TGCTCGACTC GCCGACGGAC ATCATGCCCT CGGCGCTGGC CTATCTGGGG CTCAATCCCG ACAGCCATGA ACAGGCGGAT CTCGAAAAGG CAGCCGACCT GCTGATGAAG GTCCGGCCGA ATATCCGCAA GTTCCATTCC TCGGAATATA TCAACGCGCT TGCCAATGGT GACATCTGCC TCGCCGTCGG CTTCTCCGGC GACATCTTTC AGGCGCGCGA CAGAGCGGCC GAGGCGAATG CCGGTGTGAC GGTCGACTAC TCGATACCGG AACAGGGTGC CCAGATGTGG TTCGACATGC TGGCGATCCC CGCTGATGCG CCGCATGTCG CCGAAGCGCA TGAATTCATC AACTACATGA TGAAGCCTGA AGTCATCGCC AAGGCGTCGA ACTACGTGTT CTACGCCAAC GGCAACAAGG CTTCCCAGCA ATTCCTCGAC AAGGAAGTGC TCGAAGACAC TGCGATCTAT CCGTCCGATG CCGTAATGGA GAAACTCTTC ACCACGACGC CTTTCGAGGC CAAGGAACAG AGGGTTTTGA CCCGGCTCTG GACCAGGATC GTCACTGGTC AATAA
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Protein sequence | MSKLIVATLT AAVLAGSTML ASAQERVVNV YNWSDYIDDS ILADFTKETG IKVVYDVFDS NEILETKLLA GGSGYDVVVP TAYFLQRQIA AGVFQKLDKS KLPNLSNMWD MVMERTAQYD PGNEYAVDYM WGTTGIGYNV DKMKEILGTD EKPNWDVIFD PEISAKFKDC GIHLLDSPTD IMPSALAYLG LNPDSHEQAD LEKAADLLMK VRPNIRKFHS SEYINALANG DICLAVGFSG DIFQARDRAA EANAGVTVDY SIPEQGAQMW FDMLAIPADA PHVAEAHEFI NYMMKPEVIA KASNYVFYAN GNKASQQFLD KEVLEDTAIY PSDAVMEKLF TTTPFEAKEQ RVLTRLWTRI VTGQ
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