| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_0181 |
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| Symbol | |
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| ID | 5321011 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009636 |
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| Strand | + |
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| Start bp | 199089 |
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| End bp | 201623 |
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| Gene Length | 2535 bp |
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| Protein Length | 844 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640789114 |
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| Product | bifunctional preprotein translocase subunit SecD/SecF |
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| Protein accession | YP_001325875 |
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| Protein GI | 150395408 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0341] Preprotein translocase subunit SecF
[COG0342] Preprotein translocase subunit SecD |
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| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR00966] protein-export membrane protein SecF
[TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCATACAT CCAGATGGGC GGTTCTCGCC TATGTCGCAA TTATCATCTT CGGATGCCTT
GCGGCGCTGC CGAGCGTGCT GACGCCGGCC ATGAGGGAGC AGGTCGCTTC CGTTCTCCCG
TTCGAGCCGG TCACGCTCGG CCTCGACCTG AGGGGCGGCT CGCACCTCGT CCTCGAAGTC
GACGGGGCGG GGCTTCAGAA AGCCCGCCTC AACTCGCTTC TCGACGATAC CCGCCGCGTC
TTGCGCGGTG AGCGCGTATC CGCCTCCTCG GCGCGTATCA GCGGCAATGG CGTCACCGTG
AGCATTCCCG ATGCTCAGGA CCGGGACAAG GTTCTGCCGA AGCTGCAGGA ATTGGCAACG
CCCGTAAGCA CGGTCGGTTT TGCCGCCAGT GCTCCTGAAG TCGAAGTATC GACGACGGGC
GATGTGATTA CCTTGGGCAT GACCGAGGCG GGTCTTGCCG ACCGCATGAC CAAGGCGGTC
GAGCAGAGCC TGGAAATCAT TCGCAACCGT GTCGACCAGG TCGGCGTTGC CGAGCCGCTG
ATCCAGCGGA TCGGTTCCAA CCGCATACTG GTTCAGCTCC CCGGTCTCCA GGATCCGACA
CGCCTGCGTG AGCTTCTCGG CTCCACGGCA CAGATGAGCT TCCACATGCT CGACCAGAGC
GTGGATGTGA CCCAGCCGGC TCCGCGTGGG GTGGACATTC TGCCCGGCGC CGACGATGGC
AACCGCTACG CGGTCGAGAC CCGCATTGCC ATTTCCGGAG AGCGGCTCGA AGATGCCAAG
GTCGGCTTCG ACCAGCGCAC CAATCAGCCG GTCGTGGATT TCACCTTCGA CTCGCTCGGA
GCCCGGCAGT TTGCCGACAT CACCCGCGAA AATGTCGGGC GGCCTTTCGC CATCGTGCTC
GACGGCAAGG TGTTGACGGC GCCCGTCATC AATGAGCCGA TCCTTGGTGG CCGCGGTCAG
ATCAGCGGCA GCTTTACCGT CGAGGAGGCA ACGGTTCTTT CCGCACTCCT GCGCTCCGGT
GCACTGCCCG CCCCGCTGAC CATTATCGAA GAGCGCTCCG TCGGCCCCAA TCTCGGCAGC
GACTCGATTC GCATGGGCCT CTTTACCGGT CTCGCCGGTT TCGGCCTCGT GGTCGTCCTC
ATGGTCGTCC TTTACGGGGC CTGGGGTATG ATCGCCAATG TCGGCCTGGT TCTGCACACG
ATCATGACGA TCGGCATCCT CGGCCTCATA GGCTCGACGC TGACCTTGCC CGGCATCGCC
GGTATCATCC TCGGCATCGG CATGGCCGTC GACGCCAACA TCCTTATCAA TGCCCGTATC
CGGGAAGAGA CCGAGGCGGG TGCCGGCGCG ATGAAGGCGC TCGATATCGG CTTCAACAAG
GCCTATGCGA CGATCATCGA CTCCAACGTC ACGACGCTTG CGGGCACGGT CCTTCTGTTC
TGGTTCGGCA GCGGCCCGGT CAAGGGGTTC GCCGTCACCA TGATGCTCGG CATCGGTATC
TCGATGTTCA CATCCGTTAC CGTCGTGCGT CTTCTGATGC GCGAGGTTGT CGTTCGCCGG
AAGATGAAGA AGCTCGTGAT ACCGTCGCTC TTCGGTCCGG TGCCGCGCCT GCCGAGCTTC
TCCTTCATGA AAGGCCGTTT CCTGGCGATA GGCTTTTCGG CTTTCCTGTC GATCAGTTCG
GTGGTTCTGT TCTTCACACC CGGCCTGAAT TACGGCATCG ATTTCATCGG CGGCATTCAG
GTGGAGGCGG TCTCCAAGGA GAAGATCGAC CTGGCGACGC TCCGGCGAAG CGTCGAGGAG
CTCAATCTCG GCGAGGTGGC CCTGCAGGAC TTCGGTGGCG GGCAATCGGT GTTGATCCGC
GTGCAGCGCC AGCCGGGCGG CGAGCAGGCG CAGAGCCTGG CCCTGAACAA GGTCAAGGAT
GCCGTGACGA CCGCCATCCC CGGCGCCAGC ATGGAGCGGA CCGAGGTCGT AGGTCCCACG
GTCAGCGGCG AACTGGCTCG ATCGGGCTTC CTCGCCGTGG CACTCGCCAT GGTTGCGATC
CTGCTCTACA TCTGGTTCCG CTTCGAATGG CACTTCGCCG TCGGCGCTAT CGCCGTGCTG
TTGCTCGACA TCACCAAAAC CGTCGGATTC TTTGCTCTTA CGGGCATCGA CTTCAATCTG
ACCGCGATCG CCGCGCTGCT GACGATGATC GGCTATTCGG TCAACGACAA GGTGGTGGTC
TATGACCGCA TGCGCGAAAA CCTGCGCAGG TACAAATCGA TGGCGTTCTC GGATCTGATC
GACTTGAGCA TCAATCAGGT GATCGCGCGA TGCATCTTCA CCTCCGCAGC GACGGCGCTG
TCGCTGGTTC CGATGGCCAT CTGGGGCGGC GAGGCGGTGC AGAGCTTCGC CTGGCCGATG
ATCTTCGGCG TCATCGTCGC GACGACGTCG TCCATCTATA TCGGCGGTCC GATCCTGCTG
TTCCTGAGCC GTTGGTGGAA AGAGCGGGAA GCCGCTCGTT CCGGCGGACA GCAGGCGGAA
ACGCCGACCG CCTGA
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| Protein sequence | MHTSRWAVLA YVAIIIFGCL AALPSVLTPA MREQVASVLP FEPVTLGLDL RGGSHLVLEV
DGAGLQKARL NSLLDDTRRV LRGERVSASS ARISGNGVTV SIPDAQDRDK VLPKLQELAT
PVSTVGFAAS APEVEVSTTG DVITLGMTEA GLADRMTKAV EQSLEIIRNR VDQVGVAEPL
IQRIGSNRIL VQLPGLQDPT RLRELLGSTA QMSFHMLDQS VDVTQPAPRG VDILPGADDG
NRYAVETRIA ISGERLEDAK VGFDQRTNQP VVDFTFDSLG ARQFADITRE NVGRPFAIVL
DGKVLTAPVI NEPILGGRGQ ISGSFTVEEA TVLSALLRSG ALPAPLTIIE ERSVGPNLGS
DSIRMGLFTG LAGFGLVVVL MVVLYGAWGM IANVGLVLHT IMTIGILGLI GSTLTLPGIA
GIILGIGMAV DANILINARI REETEAGAGA MKALDIGFNK AYATIIDSNV TTLAGTVLLF
WFGSGPVKGF AVTMMLGIGI SMFTSVTVVR LLMREVVVRR KMKKLVIPSL FGPVPRLPSF
SFMKGRFLAI GFSAFLSISS VVLFFTPGLN YGIDFIGGIQ VEAVSKEKID LATLRRSVEE
LNLGEVALQD FGGGQSVLIR VQRQPGGEQA QSLALNKVKD AVTTAIPGAS MERTEVVGPT
VSGELARSGF LAVALAMVAI LLYIWFRFEW HFAVGAIAVL LLDITKTVGF FALTGIDFNL
TAIAALLTMI GYSVNDKVVV YDRMRENLRR YKSMAFSDLI DLSINQVIAR CIFTSAATAL
SLVPMAIWGG EAVQSFAWPM IFGVIVATTS SIYIGGPILL FLSRWWKERE AARSGGQQAE
TPTA
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