Gene Smed_0181 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_0181 
Symbol 
ID5321011 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009636 
Strand
Start bp199089 
End bp201623 
Gene Length2535 bp 
Protein Length844 aa 
Translation table11 
GC content63% 
IMG OID640789114 
Productbifunctional preprotein translocase subunit SecD/SecF 
Protein accessionYP_001325875 
Protein GI150395408 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0341] Preprotein translocase subunit SecF
[COG0342] Preprotein translocase subunit SecD 
TIGRFAM ID[TIGR00966] protein-export membrane protein SecF
[TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCATACAT CCAGATGGGC GGTTCTCGCC TATGTCGCAA TTATCATCTT CGGATGCCTT 
GCGGCGCTGC CGAGCGTGCT GACGCCGGCC ATGAGGGAGC AGGTCGCTTC CGTTCTCCCG
TTCGAGCCGG TCACGCTCGG CCTCGACCTG AGGGGCGGCT CGCACCTCGT CCTCGAAGTC
GACGGGGCGG GGCTTCAGAA AGCCCGCCTC AACTCGCTTC TCGACGATAC CCGCCGCGTC
TTGCGCGGTG AGCGCGTATC CGCCTCCTCG GCGCGTATCA GCGGCAATGG CGTCACCGTG
AGCATTCCCG ATGCTCAGGA CCGGGACAAG GTTCTGCCGA AGCTGCAGGA ATTGGCAACG
CCCGTAAGCA CGGTCGGTTT TGCCGCCAGT GCTCCTGAAG TCGAAGTATC GACGACGGGC
GATGTGATTA CCTTGGGCAT GACCGAGGCG GGTCTTGCCG ACCGCATGAC CAAGGCGGTC
GAGCAGAGCC TGGAAATCAT TCGCAACCGT GTCGACCAGG TCGGCGTTGC CGAGCCGCTG
ATCCAGCGGA TCGGTTCCAA CCGCATACTG GTTCAGCTCC CCGGTCTCCA GGATCCGACA
CGCCTGCGTG AGCTTCTCGG CTCCACGGCA CAGATGAGCT TCCACATGCT CGACCAGAGC
GTGGATGTGA CCCAGCCGGC TCCGCGTGGG GTGGACATTC TGCCCGGCGC CGACGATGGC
AACCGCTACG CGGTCGAGAC CCGCATTGCC ATTTCCGGAG AGCGGCTCGA AGATGCCAAG
GTCGGCTTCG ACCAGCGCAC CAATCAGCCG GTCGTGGATT TCACCTTCGA CTCGCTCGGA
GCCCGGCAGT TTGCCGACAT CACCCGCGAA AATGTCGGGC GGCCTTTCGC CATCGTGCTC
GACGGCAAGG TGTTGACGGC GCCCGTCATC AATGAGCCGA TCCTTGGTGG CCGCGGTCAG
ATCAGCGGCA GCTTTACCGT CGAGGAGGCA ACGGTTCTTT CCGCACTCCT GCGCTCCGGT
GCACTGCCCG CCCCGCTGAC CATTATCGAA GAGCGCTCCG TCGGCCCCAA TCTCGGCAGC
GACTCGATTC GCATGGGCCT CTTTACCGGT CTCGCCGGTT TCGGCCTCGT GGTCGTCCTC
ATGGTCGTCC TTTACGGGGC CTGGGGTATG ATCGCCAATG TCGGCCTGGT TCTGCACACG
ATCATGACGA TCGGCATCCT CGGCCTCATA GGCTCGACGC TGACCTTGCC CGGCATCGCC
GGTATCATCC TCGGCATCGG CATGGCCGTC GACGCCAACA TCCTTATCAA TGCCCGTATC
CGGGAAGAGA CCGAGGCGGG TGCCGGCGCG ATGAAGGCGC TCGATATCGG CTTCAACAAG
GCCTATGCGA CGATCATCGA CTCCAACGTC ACGACGCTTG CGGGCACGGT CCTTCTGTTC
TGGTTCGGCA GCGGCCCGGT CAAGGGGTTC GCCGTCACCA TGATGCTCGG CATCGGTATC
TCGATGTTCA CATCCGTTAC CGTCGTGCGT CTTCTGATGC GCGAGGTTGT CGTTCGCCGG
AAGATGAAGA AGCTCGTGAT ACCGTCGCTC TTCGGTCCGG TGCCGCGCCT GCCGAGCTTC
TCCTTCATGA AAGGCCGTTT CCTGGCGATA GGCTTTTCGG CTTTCCTGTC GATCAGTTCG
GTGGTTCTGT TCTTCACACC CGGCCTGAAT TACGGCATCG ATTTCATCGG CGGCATTCAG
GTGGAGGCGG TCTCCAAGGA GAAGATCGAC CTGGCGACGC TCCGGCGAAG CGTCGAGGAG
CTCAATCTCG GCGAGGTGGC CCTGCAGGAC TTCGGTGGCG GGCAATCGGT GTTGATCCGC
GTGCAGCGCC AGCCGGGCGG CGAGCAGGCG CAGAGCCTGG CCCTGAACAA GGTCAAGGAT
GCCGTGACGA CCGCCATCCC CGGCGCCAGC ATGGAGCGGA CCGAGGTCGT AGGTCCCACG
GTCAGCGGCG AACTGGCTCG ATCGGGCTTC CTCGCCGTGG CACTCGCCAT GGTTGCGATC
CTGCTCTACA TCTGGTTCCG CTTCGAATGG CACTTCGCCG TCGGCGCTAT CGCCGTGCTG
TTGCTCGACA TCACCAAAAC CGTCGGATTC TTTGCTCTTA CGGGCATCGA CTTCAATCTG
ACCGCGATCG CCGCGCTGCT GACGATGATC GGCTATTCGG TCAACGACAA GGTGGTGGTC
TATGACCGCA TGCGCGAAAA CCTGCGCAGG TACAAATCGA TGGCGTTCTC GGATCTGATC
GACTTGAGCA TCAATCAGGT GATCGCGCGA TGCATCTTCA CCTCCGCAGC GACGGCGCTG
TCGCTGGTTC CGATGGCCAT CTGGGGCGGC GAGGCGGTGC AGAGCTTCGC CTGGCCGATG
ATCTTCGGCG TCATCGTCGC GACGACGTCG TCCATCTATA TCGGCGGTCC GATCCTGCTG
TTCCTGAGCC GTTGGTGGAA AGAGCGGGAA GCCGCTCGTT CCGGCGGACA GCAGGCGGAA
ACGCCGACCG CCTGA
 
Protein sequence
MHTSRWAVLA YVAIIIFGCL AALPSVLTPA MREQVASVLP FEPVTLGLDL RGGSHLVLEV 
DGAGLQKARL NSLLDDTRRV LRGERVSASS ARISGNGVTV SIPDAQDRDK VLPKLQELAT
PVSTVGFAAS APEVEVSTTG DVITLGMTEA GLADRMTKAV EQSLEIIRNR VDQVGVAEPL
IQRIGSNRIL VQLPGLQDPT RLRELLGSTA QMSFHMLDQS VDVTQPAPRG VDILPGADDG
NRYAVETRIA ISGERLEDAK VGFDQRTNQP VVDFTFDSLG ARQFADITRE NVGRPFAIVL
DGKVLTAPVI NEPILGGRGQ ISGSFTVEEA TVLSALLRSG ALPAPLTIIE ERSVGPNLGS
DSIRMGLFTG LAGFGLVVVL MVVLYGAWGM IANVGLVLHT IMTIGILGLI GSTLTLPGIA
GIILGIGMAV DANILINARI REETEAGAGA MKALDIGFNK AYATIIDSNV TTLAGTVLLF
WFGSGPVKGF AVTMMLGIGI SMFTSVTVVR LLMREVVVRR KMKKLVIPSL FGPVPRLPSF
SFMKGRFLAI GFSAFLSISS VVLFFTPGLN YGIDFIGGIQ VEAVSKEKID LATLRRSVEE
LNLGEVALQD FGGGQSVLIR VQRQPGGEQA QSLALNKVKD AVTTAIPGAS MERTEVVGPT
VSGELARSGF LAVALAMVAI LLYIWFRFEW HFAVGAIAVL LLDITKTVGF FALTGIDFNL
TAIAALLTMI GYSVNDKVVV YDRMRENLRR YKSMAFSDLI DLSINQVIAR CIFTSAATAL
SLVPMAIWGG EAVQSFAWPM IFGVIVATTS SIYIGGPILL FLSRWWKERE AARSGGQQAE
TPTA