Gene Smed_0172 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_0172 
Symbol 
ID5321002 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009636 
Strand
Start bp190274 
End bp191440 
Gene Length1167 bp 
Protein Length388 aa 
Translation table11 
GC content63% 
IMG OID640789105 
Productamidohydrolase 
Protein accessionYP_001325866 
Protein GI150395399 
COG category[R] General function prediction only 
COG ID[COG1473] Metal-dependent amidase/aminoacylase/carboxypeptidase 
TIGRFAM ID[TIGR01891] amidohydrolase 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones24 
Fosmid unclonability p-value0.564603 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAACTCT CCGCCTCGAT CGATAATGCC ATGCCGGAAC TCGTCGCCAT CCGGCGCGAC 
TTCCACGCCC ATCCCGAACT GGGGCTCGCG GAGACGCGGA CATCCGCCTT CGTGGCGCGC
CATTTGGAAG CGCTCGGCTT TGAGGTGACG ACGGGTTTGG CAAAGACAGG TGTGGTCGGT
ACGCTGAGCT GCGGCACCGG TTCGCGCTCG ATCGGCATCC GAGCCGACAT GGATGCCTTG
CCGATCGCGG AAGAAACCGG CCTCGACTAT GCCAGCAAGA CGCCAGGGCT GATGCATGCC
TGCGGGCACG ACGGCCATAC CGCCATGCTG CTCGGAGCAG CCCGGGCGCT TGCCGAACGA
AAGAATTTCA ACGGTACGAT CCACCTCATT TTCCAACCGG CCGAGGAGAA TGCCGGCGGC
GCGAAGATCA TGGTCGACGA GGGTCTCTTC GAGAGATTCC CCTGCGATGC CGTGTTCGCA
CTTCACAACG AACCGAACCT GCCCTTCGGC CAGTTCGCCC TTTGCGACGG GCCGATCATG
GCGGCGGTCG ACGAGGCCCG GATCACCGTT CATGGCCGCG GCGGTCACGG CGCCGAACCG
CAGGAGACCG CCGATCCGAT CGTCTGCGGC GCCAGCATCG TCATGGCGCT GCAGACCGTC
GTCGCACGCA ACATCCACCC GATGGATCCG TCCGTCGTGA CCGTCGGCGC CTTTCACGCC
GGCTCGGCCA GCAACATCAT TCCGGAGCGG GCGGAGATCG TCGTCGGCAT CCGCTCCTTC
GATCCCGCCG TTCGCGACGA ACTCGAACGC CGCATCCGGA TGATCGCCAA ATCGCAAGCC
GAAAGCTTTG GCATGCGCGC GACCGTCGAT TACGAACGCA GCTATGACGC GACCGTCAAC
CACAAGGCGG AGACGGATTT CCTTCGCGAA ACCGCCATCC GCTTCGCCGG CGCCGACCAC
GTCGTCGATC TCCAACGACC CTTCATGGGA AGCGAAGACT TCGCCTACAT GCTGAAGGAA
AGGCCAGGCA GCTATTTCTT TCTGGGCTCG CGCGTAACGG GCGAGGAAAA GTCCCTCCAC
CACCCCGGCT ATAATTTCAA TGACGATCTG CTCCCGATCG GGGTGGCCTT CTGGACCGAA
CTCGCCGAGG CCTACCTCGC GCGCTAG
 
Protein sequence
MKLSASIDNA MPELVAIRRD FHAHPELGLA ETRTSAFVAR HLEALGFEVT TGLAKTGVVG 
TLSCGTGSRS IGIRADMDAL PIAEETGLDY ASKTPGLMHA CGHDGHTAML LGAARALAER
KNFNGTIHLI FQPAEENAGG AKIMVDEGLF ERFPCDAVFA LHNEPNLPFG QFALCDGPIM
AAVDEARITV HGRGGHGAEP QETADPIVCG ASIVMALQTV VARNIHPMDP SVVTVGAFHA
GSASNIIPER AEIVVGIRSF DPAVRDELER RIRMIAKSQA ESFGMRATVD YERSYDATVN
HKAETDFLRE TAIRFAGADH VVDLQRPFMG SEDFAYMLKE RPGSYFFLGS RVTGEEKSLH
HPGYNFNDDL LPIGVAFWTE LAEAYLAR