Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smed_0172 |
Symbol | |
ID | 5321002 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sinorhizobium medicae WSM419 |
Kingdom | Bacteria |
Replicon accession | NC_009636 |
Strand | - |
Start bp | 190274 |
End bp | 191440 |
Gene Length | 1167 bp |
Protein Length | 388 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 640789105 |
Product | amidohydrolase |
Protein accession | YP_001325866 |
Protein GI | 150395399 |
COG category | [R] General function prediction only |
COG ID | [COG1473] Metal-dependent amidase/aminoacylase/carboxypeptidase |
TIGRFAM ID | [TIGR01891] amidohydrolase |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 0.564603 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAAACTCT CCGCCTCGAT CGATAATGCC ATGCCGGAAC TCGTCGCCAT CCGGCGCGAC TTCCACGCCC ATCCCGAACT GGGGCTCGCG GAGACGCGGA CATCCGCCTT CGTGGCGCGC CATTTGGAAG CGCTCGGCTT TGAGGTGACG ACGGGTTTGG CAAAGACAGG TGTGGTCGGT ACGCTGAGCT GCGGCACCGG TTCGCGCTCG ATCGGCATCC GAGCCGACAT GGATGCCTTG CCGATCGCGG AAGAAACCGG CCTCGACTAT GCCAGCAAGA CGCCAGGGCT GATGCATGCC TGCGGGCACG ACGGCCATAC CGCCATGCTG CTCGGAGCAG CCCGGGCGCT TGCCGAACGA AAGAATTTCA ACGGTACGAT CCACCTCATT TTCCAACCGG CCGAGGAGAA TGCCGGCGGC GCGAAGATCA TGGTCGACGA GGGTCTCTTC GAGAGATTCC CCTGCGATGC CGTGTTCGCA CTTCACAACG AACCGAACCT GCCCTTCGGC CAGTTCGCCC TTTGCGACGG GCCGATCATG GCGGCGGTCG ACGAGGCCCG GATCACCGTT CATGGCCGCG GCGGTCACGG CGCCGAACCG CAGGAGACCG CCGATCCGAT CGTCTGCGGC GCCAGCATCG TCATGGCGCT GCAGACCGTC GTCGCACGCA ACATCCACCC GATGGATCCG TCCGTCGTGA CCGTCGGCGC CTTTCACGCC GGCTCGGCCA GCAACATCAT TCCGGAGCGG GCGGAGATCG TCGTCGGCAT CCGCTCCTTC GATCCCGCCG TTCGCGACGA ACTCGAACGC CGCATCCGGA TGATCGCCAA ATCGCAAGCC GAAAGCTTTG GCATGCGCGC GACCGTCGAT TACGAACGCA GCTATGACGC GACCGTCAAC CACAAGGCGG AGACGGATTT CCTTCGCGAA ACCGCCATCC GCTTCGCCGG CGCCGACCAC GTCGTCGATC TCCAACGACC CTTCATGGGA AGCGAAGACT TCGCCTACAT GCTGAAGGAA AGGCCAGGCA GCTATTTCTT TCTGGGCTCG CGCGTAACGG GCGAGGAAAA GTCCCTCCAC CACCCCGGCT ATAATTTCAA TGACGATCTG CTCCCGATCG GGGTGGCCTT CTGGACCGAA CTCGCCGAGG CCTACCTCGC GCGCTAG
|
Protein sequence | MKLSASIDNA MPELVAIRRD FHAHPELGLA ETRTSAFVAR HLEALGFEVT TGLAKTGVVG TLSCGTGSRS IGIRADMDAL PIAEETGLDY ASKTPGLMHA CGHDGHTAML LGAARALAER KNFNGTIHLI FQPAEENAGG AKIMVDEGLF ERFPCDAVFA LHNEPNLPFG QFALCDGPIM AAVDEARITV HGRGGHGAEP QETADPIVCG ASIVMALQTV VARNIHPMDP SVVTVGAFHA GSASNIIPER AEIVVGIRSF DPAVRDELER RIRMIAKSQA ESFGMRATVD YERSYDATVN HKAETDFLRE TAIRFAGADH VVDLQRPFMG SEDFAYMLKE RPGSYFFLGS RVTGEEKSLH HPGYNFNDDL LPIGVAFWTE LAEAYLAR
|
| |